-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_492

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5900, 5984
Sorry, prediction GlimmerHMM_glimmerT_60418-T1 fails validation.
(ATG)	 CC	3483-3667	GT	TGG
(CAA)	 AG	5900-5984	GT	AGG
-recovered GlimmerHMM_glimmerT_60418-T1, initial, 3483, 3667
-recovered GlimmerHMM_glimmerT_60418-T1, internal, 5900, 5984
Valid prediction for GlimmerHMM_glimmerT_60417-T1
Valid prediction for snap_scaffold_492-snap.3-T1
Couldn't classify 349, 412
Sorry, prediction snap_scaffold_492-snap.2-T1 fails validation.
(AAA)	 AG	349-412	GT	CTG
(GTA)	 AG	2582-2646	GT	AGG
(GAG)	 AG	3261-3335	CA	AAC
-recovered snap_scaffold_492-snap.2-T1, terminal, 3261, 3335
-recovered snap_scaffold_492-snap.2-T1, internal, 349, 412
-recovered snap_scaffold_492-snap.2-T1, internal, 2582, 2646

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2864, 3041
Couldn't classify 6292, 6372
Sorry, prediction snap_scaffold_492-snap.1-T1 fails validation.
(ATC)	 AG	2864-3041	GT	ATG
(AAA)	 AG	5560-5623	GT	CTG
(ACA)	 AG	6292-6372	GT	ATG
-recovered snap_scaffold_492-snap.1-T1, internal, 2864, 3041
-recovered snap_scaffold_492-snap.1-T1, internal, 5560, 5623
-recovered snap_scaffold_492-snap.1-T1, internal, 6292, 6372

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3650, rend_intergenic: 349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6513
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3650, rend_intergenic: 349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support