-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_490

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_490-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_490-snap.3-T1
Couldn't classify 764, 883
Sorry, prediction GlimmerHMM_glimmerT_60415-T1 fails validation.
(AAC)	 AG	764-883	GT	GGG
(GCA)	 AG	5554-5618	GT	AGG
(TCT)	 AG	5757-5931	CC	GAC
-recovered GlimmerHMM_glimmerT_60415-T1, terminal, 5757, 5931
-recovered GlimmerHMM_glimmerT_60415-T1, internal, 764, 883
-recovered GlimmerHMM_glimmerT_60415-T1, internal, 5554, 5618
Valid prediction for snap_scaffold_490-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5723, rend_intergenic: 2256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6530
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5723, rend_intergenic: 2256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support