-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_49

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39461.t1
Valid prediction for snap_scaffold_49-snap.2-T1
Couldn't classify 27845, 28394
Sorry, prediction GlimmerHMM_glimmerT_59581-T1 fails validation.
(ATG)	 AA	22869-22957	GT	AGG
(GGC)	 AG	23656-23769	GT	AGG
(GAT)	 AG	23947-24063	GT	GGG
(AGA)	 AG	25840-25903	GT	CAG
(AAG)	 AG	27845-28394	GT	AAG
-recovered GlimmerHMM_glimmerT_59581-T1, initial, 22869, 22957
-recovered GlimmerHMM_glimmerT_59581-T1, internal, 23656, 23769
-recovered GlimmerHMM_glimmerT_59581-T1, internal, 23947, 24063
-recovered GlimmerHMM_glimmerT_59581-T1, internal, 25840, 25903
-recovered GlimmerHMM_glimmerT_59581-T1, internal, 27845, 28394
Valid prediction for snap_scaffold_49-snap.1-T1
Valid prediction for Augustus_model.g39460.t1
Valid prediction for snap_scaffold_49-snap.4-T1
Valid prediction for snap_scaffold_49-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59580-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59579-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 28496
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support