-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_488

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3140, 3255
Sorry, prediction snap_scaffold_488-snap.3-T1 fails validation.
(GCT)	 AG	3140-3255	GT	TGG
(GGT)	 AG	3685-3777	GT	GGG
(GTG)	 AG	4861-4956	GT	GGG
(ATG)	 AG	5563-5631	GA	AAG
-recovered snap_scaffold_488-snap.3-T1, terminal, 5563, 5631
-recovered snap_scaffold_488-snap.3-T1, internal, 3140, 3255
-recovered snap_scaffold_488-snap.3-T1, internal, 3685, 3777
-recovered snap_scaffold_488-snap.3-T1, internal, 4861, 4956
Couldn't classify 4861, 4956
Sorry, prediction GlimmerHMM_glimmerT_60412-T1 fails validation.
(ATG)	 AC	2398-2500	GT	TTG
(GCT)	 AG	3140-3255	GT	TGG
(GGT)	 AG	3685-3777	GT	GGG
(GTG)	 AG	4861-4956	GT	GGG
-recovered GlimmerHMM_glimmerT_60412-T1, initial, 2398, 2500
-recovered GlimmerHMM_glimmerT_60412-T1, internal, 3140, 3255
-recovered GlimmerHMM_glimmerT_60412-T1, internal, 3685, 3777
-recovered GlimmerHMM_glimmerT_60412-T1, internal, 4861, 4956
Couldn't classify 3139, 3255
Couldn't classify 4861, 4956
Sorry, prediction pasa_asmbl_43742.p1 fails validation.
(GGC)	 CA	3139-3255	GT	TGG
(GGT)	 AG	3685-3777	GT	GGG
(GTG)	 AG	4861-4956	GT	GGG
-recovered pasa_asmbl_43742.p1, internal, 3685, 3777
-recovered pasa_asmbl_43742.p1, internal, 4861, 4956
Valid prediction for Augustus_model.g39992.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_488-snap.1-T1
Valid prediction for snap_scaffold_488-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6551
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support