-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_486

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 360, 497
Sorry, prediction snap_scaffold_486-snap.2-T1 fails validation.
(ACA)	 AG	360-497	GT	AGG
(ATA)	 AG	728-865	GT	TGG
(ATA)	 AG	1146-1285	GT	GTG
(CCA)	 AG	3879-4211	AC	AGA
-recovered snap_scaffold_486-snap.2-T1, terminal, 3879, 4211
-recovered snap_scaffold_486-snap.2-T1, internal, 360, 497
-recovered snap_scaffold_486-snap.2-T1, internal, 728, 865
-recovered snap_scaffold_486-snap.2-T1, internal, 1146, 1285
Valid prediction for snap_scaffold_486-snap.3-T1
Couldn't classify 360, 497
Sorry, prediction Augustus_model.g39990.t1 fails validation.
(ACA)	 AG	360-497	GT	AGG
(ATA)	 AG	728-865	GT	TGG
(ACG)	 AG	1193-1289	GT	GGG
(TCG)	 AG	3827-4211	AC	AGA
-recovered Augustus_model.g39990.t1, terminal, 3827, 4211
-recovered Augustus_model.g39990.t1, internal, 360, 497
-recovered Augustus_model.g39990.t1, internal, 728, 865
-recovered Augustus_model.g39990.t1, internal, 1193, 1289
Valid prediction for GlimmerHMM_glimmerT_60410-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2375, 2666
Couldn't classify 6139, 6262
Sorry, prediction snap_scaffold_486-snap.1-T1 fails validation.
(AGC)	 AG	2375-2666	GT	AGG
(AAG)	 AG	5681-5814	GT	CAG
(CGA)	 AG	6139-6262	GT	AGG
-recovered snap_scaffold_486-snap.1-T1, internal, 2375, 2666
-recovered snap_scaffold_486-snap.1-T1, internal, 5681, 5814
-recovered snap_scaffold_486-snap.1-T1, internal, 6139, 6262

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4199, rend_intergenic: 360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6573
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4199, rend_intergenic: 360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support