-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_485

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1202, 1281
Sorry, prediction snap_scaffold_485-snap.2-T1 fails validation.
(AAA)	 AG	1202-1281	GT	AGG
(GTG)	 AG	4125-4204	GT	AGG
(TCG)	 AG	4478-4618	GT	AGG
(GAT)	 AG	5725-5925	TG	GAT
-recovered snap_scaffold_485-snap.2-T1, terminal, 5725, 5925
-recovered snap_scaffold_485-snap.2-T1, internal, 1202, 1281
-recovered snap_scaffold_485-snap.2-T1, internal, 4125, 4204
-recovered snap_scaffold_485-snap.2-T1, internal, 4478, 4618
Couldn't classify 4478, 4618
Sorry, prediction GlimmerHMM_glimmerT_60409-T1 fails validation.
(ATG)	 AC	2209-2256	GT	CGG
(TCG)	 AG	4478-4618	GT	AGG
-recovered GlimmerHMM_glimmerT_60409-T1, initial, 2209, 2256
-recovered GlimmerHMM_glimmerT_60409-T1, internal, 4478, 4618
Valid prediction for Augustus_model.g39989.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 646, 721
Sorry, prediction snap_scaffold_485-snap.1-T1 fails validation.
(TTC)	 AG	646-721	GT	TGG
(GAT)	 AG	2026-2214	GT	ACG
(GAT)	 AG	5554-5823	GG	AGG
-recovered snap_scaffold_485-snap.1-T1, terminal, 5554, 5823
-recovered snap_scaffold_485-snap.1-T1, internal, 646, 721
-recovered snap_scaffold_485-snap.1-T1, internal, 2026, 2214

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5929, rend_intergenic: 1202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6574
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5929, rend_intergenic: 1202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support