-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_484

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5182, 6584
Sorry, prediction Augustus_model.g39987.t1 fails validation.
(ATG)	 AT	5014-5076	GT	AGG
(AAT)	 AG	5182-6584		AC
-recovered Augustus_model.g39987.t1, initial, 5014, 5076
Couldn't classify 267, 342
Sorry, prediction snap_scaffold_484-snap.2-T1 fails validation.
(TTT)	 AG	267-342	GT	TGG
(GGG)	 AG	464-546	GT	ACG
(AAG)	 AG	723-811	GT	TGG
(TCA)	 AG	988-1049	GT	AGG
(GTC)	 AG	1263-1351	GG	GAG
-recovered snap_scaffold_484-snap.2-T1, terminal, 1263, 1351
-recovered snap_scaffold_484-snap.2-T1, internal, 267, 342
-recovered snap_scaffold_484-snap.2-T1, internal, 464, 546
-recovered snap_scaffold_484-snap.2-T1, internal, 723, 811
-recovered snap_scaffold_484-snap.2-T1, internal, 988, 1049
Couldn't classify 267, 342
Sorry, prediction Augustus_model.g39988.t1 fails validation.
(TTT)	 AG	267-342	GT	TGG
(GGG)	 AG	464-546	GT	ACG
(TTT)	 AG	707-806	GT	AGG
(GTC)	 AG	1263-1351	GG	GAG
-recovered Augustus_model.g39988.t1, terminal, 1263, 1351
-recovered Augustus_model.g39988.t1, internal, 267, 342
-recovered Augustus_model.g39988.t1, internal, 464, 546
-recovered Augustus_model.g39988.t1, internal, 707, 806
Valid prediction for GlimmerHMM_glimmerT_60407-T1
Couldn't classify 5182, 6574
Sorry, prediction snap_scaffold_484-snap.1-T1 fails validation.
(ATG)	 AT	5014-5076	GT	AGG
(AAT)	 AG	5182-6574	GT	GCG
-recovered snap_scaffold_484-snap.1-T1, initial, 5014, 5076
-recovered snap_scaffold_484-snap.1-T1, internal, 5182, 6574
Couldn't classify 267, 342
Sorry, prediction GlimmerHMM_glimmerT_60408-T1 fails validation.
(TTT)	 AG	267-342	GT	TGG
(GGG)	 AG	464-529	GT	CCG
(GTC)	 AG	1263-1333	GT	TGG
(GGT)	 AG	5208-5366	CA	AGC
-recovered GlimmerHMM_glimmerT_60408-T1, terminal, 5208, 5366
-recovered GlimmerHMM_glimmerT_60408-T1, internal, 267, 342
-recovered GlimmerHMM_glimmerT_60408-T1, internal, 464, 529
-recovered GlimmerHMM_glimmerT_60408-T1, internal, 1263, 1333

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6584
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support