-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_484 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 5182, 6584 Sorry, prediction Augustus_model.g39987.t1 fails validation. (ATG) AT 5014-5076 GT AGG (AAT) AG 5182-6584 AC -recovered Augustus_model.g39987.t1, initial, 5014, 5076 Couldn't classify 267, 342 Sorry, prediction snap_scaffold_484-snap.2-T1 fails validation. (TTT) AG 267-342 GT TGG (GGG) AG 464-546 GT ACG (AAG) AG 723-811 GT TGG (TCA) AG 988-1049 GT AGG (GTC) AG 1263-1351 GG GAG -recovered snap_scaffold_484-snap.2-T1, terminal, 1263, 1351 -recovered snap_scaffold_484-snap.2-T1, internal, 267, 342 -recovered snap_scaffold_484-snap.2-T1, internal, 464, 546 -recovered snap_scaffold_484-snap.2-T1, internal, 723, 811 -recovered snap_scaffold_484-snap.2-T1, internal, 988, 1049 Couldn't classify 267, 342 Sorry, prediction Augustus_model.g39988.t1 fails validation. (TTT) AG 267-342 GT TGG (GGG) AG 464-546 GT ACG (TTT) AG 707-806 GT AGG (GTC) AG 1263-1351 GG GAG -recovered Augustus_model.g39988.t1, terminal, 1263, 1351 -recovered Augustus_model.g39988.t1, internal, 267, 342 -recovered Augustus_model.g39988.t1, internal, 464, 546 -recovered Augustus_model.g39988.t1, internal, 707, 806 Valid prediction for GlimmerHMM_glimmerT_60407-T1 Couldn't classify 5182, 6574 Sorry, prediction snap_scaffold_484-snap.1-T1 fails validation. (ATG) AT 5014-5076 GT AGG (AAT) AG 5182-6574 GT GCG -recovered snap_scaffold_484-snap.1-T1, initial, 5014, 5076 -recovered snap_scaffold_484-snap.1-T1, internal, 5182, 6574 Couldn't classify 267, 342 Sorry, prediction GlimmerHMM_glimmerT_60408-T1 fails validation. (TTT) AG 267-342 GT TGG (GGG) AG 464-529 GT CCG (GTC) AG 1263-1333 GT TGG (GGT) AG 5208-5366 CA AGC -recovered GlimmerHMM_glimmerT_60408-T1, terminal, 5208, 5366 -recovered GlimmerHMM_glimmerT_60408-T1, internal, 267, 342 -recovered GlimmerHMM_glimmerT_60408-T1, internal, 464, 529 -recovered GlimmerHMM_glimmerT_60408-T1, internal, 1263, 1333 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 6584 -exon list size: 21 building trellis 4.3 8.7 13.0 17.4 21.7 26.1 30.4 34.8 39.1 43.5 47.8 52.2 56.5 60.9 65.2 69.6 73.9 78.3 82.6 87.0 91.3 95.7 -found 2 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support