-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_483

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 129, 319
Sorry, prediction snap_scaffold_483-snap.1-T1 fails validation.
(CCG)	 AG	129-319	GT	CGG
(AGC)	 AG	1198-1342	GT	AGG
(AGA)	 AG	1365-1446	GA	GAG
-recovered snap_scaffold_483-snap.1-T1, terminal, 1365, 1446
-recovered snap_scaffold_483-snap.1-T1, internal, 129, 319
-recovered snap_scaffold_483-snap.1-T1, internal, 1198, 1342
Valid prediction for snap_scaffold_483-snap.3-T1
Valid prediction for snap_scaffold_483-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60406-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6591
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support