-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_48

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39457.t1
Valid prediction for snap_scaffold_48-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59578-T1
Valid prediction for GlimmerHMM_glimmerT_59575-T1
Valid prediction for Augustus_model.g39459.t1
Couldn't classify 747, 846
Sorry, prediction snap_scaffold_48-snap.1-T1 fails validation.
(ATT)	 AG	747-846	GT	CAG
(GTC)	 AG	1213-1293	GT	AGG
(GTC)	 AG	1353-1429	GC	AAG
-recovered snap_scaffold_48-snap.1-T1, terminal, 1353, 1429
-recovered snap_scaffold_48-snap.1-T1, internal, 747, 846
-recovered snap_scaffold_48-snap.1-T1, internal, 1213, 1293
-recovered snap_scaffold_48-snap.1-T1, internal, 1353, 1429

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_48-snap.2-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g39458.t1
Valid prediction for GlimmerHMM_glimmerT_59577-T1
Valid prediction for GlimmerHMM_glimmerT_59576-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 28510
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support