-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_477

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4779, 4935
Sorry, prediction GlimmerHMM_glimmerT_60398-T1 fails validation.
(ATG)	 AA	3657-3703	GT	CTG
(TCA)	 AG	4779-4935	GT	CAG
-recovered GlimmerHMM_glimmerT_60398-T1, initial, 3657, 3703
-recovered GlimmerHMM_glimmerT_60398-T1, internal, 4779, 4935
Couldn't classify 3429, 3703
Couldn't classify 5941, 6149
Sorry, prediction snap_scaffold_477-snap.2-T1 fails validation.
(AAG)	 AG	3429-3703	GT	CTG
(GGA)	 AG	4292-4526	GT	GAG
(AGT)	 AG	4783-4944	GT	TGG
(TCT)	 AG	5941-6149	GT	AGG
-recovered snap_scaffold_477-snap.2-T1, internal, 3429, 3703
-recovered snap_scaffold_477-snap.2-T1, internal, 4292, 4526
-recovered snap_scaffold_477-snap.2-T1, internal, 4783, 4944
-recovered snap_scaffold_477-snap.2-T1, internal, 5941, 6149

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1755, 1886
Sorry, prediction snap_scaffold_477-snap.1-T1 fails validation.
(ATC)	 AG	1755-1886	GT	AGG
(ATC)	 AG	4763-4813	GT	AGG
(GCT)	 AG	5943-6131	AG	AGA
-recovered snap_scaffold_477-snap.1-T1, terminal, 5943, 6131
-recovered snap_scaffold_477-snap.1-T1, internal, 1755, 1886
-recovered snap_scaffold_477-snap.1-T1, internal, 4763, 4813
Couldn't classify 1755, 1886
Sorry, prediction Augustus_model.g39984.t1 fails validation.
(ATC)	 AG	1755-1886	GT	AGG
(TTC)	 AG	2287-2301	TT	AAT
-recovered Augustus_model.g39984.t1, terminal, 2287, 2301
-recovered Augustus_model.g39984.t1, internal, 1755, 1886

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4899, rend_intergenic: 3429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6653
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4899, rend_intergenic: 3429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support