-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_475

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60394-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39982.t1
Valid prediction for GlimmerHMM_glimmerT_60395-T1
Valid prediction for GlimmerHMM_glimmerT_60396-T1
Couldn't classify 5574, 5740
Sorry, prediction snap_scaffold_475-snap.1-T1 fails validation.
(ATG)	 AC	4703-4750	GT	GAG
(CTA)	 AG	4825-5197	GT	CAG
(AAC)	 AG	5574-5740	GT	TGG
-recovered snap_scaffold_475-snap.1-T1, initial, 4703, 4750
-recovered snap_scaffold_475-snap.1-T1, internal, 4825, 5197
-recovered snap_scaffold_475-snap.1-T1, internal, 5574, 5740
Valid prediction for CodingQuarry_transcript_49467-T1
Valid prediction for snap_scaffold_475-snap.2-T1
Couldn't classify 23, 188
Sorry, prediction snap_scaffold_475-snap.3-T1 fails validation.
(GCC)	 AG	23-188	GT	AGG
(AAT)	 AG	1168-1216	GT	AGG
(GTC)	 AG	1809-2104	GA	AGG
-recovered snap_scaffold_475-snap.3-T1, terminal, 1809, 2104
-recovered snap_scaffold_475-snap.3-T1, internal, 23, 188
-recovered snap_scaffold_475-snap.3-T1, internal, 1168, 1216

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6672
-exon list size: 18


building trellis

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45.0    
50.0    
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-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support