-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_474

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6077, 6172
Sorry, prediction Augustus_model.g39981.t1 fails validation.
(ATG)	 GC	2406-2487	GT	CCG
(GGG)	 AG	2681-2703	GT	TGG
(AAG)	 AG	3701-3790	GT	AGG
(CAC)	 AG	4096-4164	GT	CAG
(GAC)	 AG	4440-4543	GT	AGG
(GTT)	 AG	5508-5607	GT	AGG
(GAG)	 AG	6077-6172	GT	AGG
-recovered Augustus_model.g39981.t1, initial, 2406, 2487
-recovered Augustus_model.g39981.t1, internal, 2681, 2703
-recovered Augustus_model.g39981.t1, internal, 3701, 3790
-recovered Augustus_model.g39981.t1, internal, 4096, 4164
-recovered Augustus_model.g39981.t1, internal, 4440, 4543
-recovered Augustus_model.g39981.t1, internal, 5508, 5607
-recovered Augustus_model.g39981.t1, internal, 6077, 6172
Couldn't classify 59, 92
Couldn't classify 6173, 6365
Sorry, prediction snap_scaffold_474-snap.1-T1 fails validation.
(ACA)	 AG	59-92	GT	GAG
(AAG)	 AG	3701-3790	GT	AGG
(CAC)	 AG	4096-4164	GT	CAG
(GAC)	 AG	4440-4543	GT	AGG
(GTT)	 AG	5508-5941	GT	AGG
(GTC)	 AG	6173-6365	GT	GGG
-recovered snap_scaffold_474-snap.1-T1, internal, 59, 92
-recovered snap_scaffold_474-snap.1-T1, internal, 3701, 3790
-recovered snap_scaffold_474-snap.1-T1, internal, 4096, 4164
-recovered snap_scaffold_474-snap.1-T1, internal, 4440, 4543
-recovered snap_scaffold_474-snap.1-T1, internal, 5508, 5941
-recovered snap_scaffold_474-snap.1-T1, internal, 6173, 6365
Couldn't classify 6077, 6172
Sorry, prediction GlimmerHMM_glimmerT_60393-T1 fails validation.
(ATG)	 TC	4479-4543	GT	AGG
(GTT)	 AG	5508-5607	GT	AGG
(GAG)	 AG	6077-6172	GT	AGG
-recovered GlimmerHMM_glimmerT_60393-T1, initial, 4479, 4543
-recovered GlimmerHMM_glimmerT_60393-T1, internal, 5508, 5607
-recovered GlimmerHMM_glimmerT_60393-T1, internal, 6077, 6172
Couldn't classify 3719, 3790
Couldn't classify 6077, 6172
Sorry, prediction pasa_asmbl_43733.p1 fails validation.
(AGA)	 AG	3719-3790	GT	AGG
(CAC)	 AG	4096-4164	GT	CAG
(GAC)	 AG	4440-4543	GT	AGG
(GTT)	 AG	5508-5607	GT	AGG
(GAG)	 AG	6077-6172	GT	AGG
-recovered pasa_asmbl_43733.p1, internal, 3719, 3790
-recovered pasa_asmbl_43733.p1, internal, 4096, 4164
-recovered pasa_asmbl_43733.p1, internal, 4440, 4543
-recovered pasa_asmbl_43733.p1, internal, 5508, 5607
-recovered pasa_asmbl_43733.p1, internal, 6077, 6172

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6679
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support