-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_472

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_472-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60391-T1
Couldn't classify 2251, 2353
Couldn't classify 5467, 5676
Sorry, prediction snap_scaffold_472-snap.1-T1 fails validation.
(ACT)	 AG	2251-2353	GT	GGG
(ACT)	 AG	3964-4245	GT	CCG
(GGG)	 AG	5305-5321	GT	GAG
(GAC)	 AG	5467-5676	GT	AGG
-recovered snap_scaffold_472-snap.1-T1, internal, 2251, 2353
-recovered snap_scaffold_472-snap.1-T1, internal, 3964, 4245
-recovered snap_scaffold_472-snap.1-T1, internal, 5305, 5321
-recovered snap_scaffold_472-snap.1-T1, internal, 5467, 5676

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4452, rend_intergenic: 2444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6702
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4452, rend_intergenic: 2444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support