-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_47

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_47-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39456.t1
Valid prediction for snap_scaffold_47-snap.1-T1
Couldn't classify 7901, 8004
Couldn't classify 11921, 11976
Sorry, prediction pasa_asmbl_43732.p1 fails validation.
(GAG)	 CA	7901-8004	GT	AGG
(GAT)	 AG	8470-8621	GT	TGG
(AGG)	 AG	8957-8992	GT	AGG
(AGG)	 AG	11489-11542	GT	AGG
(GAC)	 AG	11921-11976	TA	CGT
-recovered pasa_asmbl_43732.p1, internal, 8470, 8621
-recovered pasa_asmbl_43732.p1, internal, 8957, 8992
-recovered pasa_asmbl_43732.p1, internal, 11489, 11542
Couldn't classify 6687, 6815
Sorry, prediction GlimmerHMM_glimmerT_59574-T1 fails validation.
(GAG)	 AG	6687-6815	GT	CTG
(ATG)	 AG	7884-8004	GT	AGG
(GAT)	 AG	8470-8621	GT	TGG
(GAC)	 AG	11921-12027	AG	GAA
add_exon() Sorry, GlimmerHMM_glimmerT_59574-T1 7884-8004-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_59574-T1, initial, 7884, 8004
-recovered GlimmerHMM_glimmerT_59574-T1, terminal, 11921, 12027
-recovered GlimmerHMM_glimmerT_59574-T1, internal, 6687, 6815
-recovered GlimmerHMM_glimmerT_59574-T1, internal, 7884, 8004
-recovered GlimmerHMM_glimmerT_59574-T1, internal, 8470, 8621
Valid prediction for snap_scaffold_47-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26184, rend_intergenic: 24628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 29000
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 26184, rend_intergenic: 24628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support
	-no exons in range 1 - 16973