-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_469

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 135, 236
Sorry, prediction snap_scaffold_469-snap.2-T1 fails validation.
(GTC)	 AG	135-236	GT	AGG
(CCC)	 AG	5430-5592	AA	AGA
-recovered snap_scaffold_469-snap.2-T1, terminal, 5430, 5592
-recovered snap_scaffold_469-snap.2-T1, internal, 135, 236

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1122, 1381
Sorry, prediction Augustus_model.g39978.t1 fails validation.
(ACT)	 AG	1122-1381	GT	TGG
(ATG)	 AG	1736-1759	TC	AAT
-recovered Augustus_model.g39978.t1, terminal, 1736, 1759
-recovered Augustus_model.g39978.t1, internal, 1122, 1381
Couldn't classify 1122, 1381
Sorry, prediction snap_scaffold_469-snap.3-T1 fails validation.
(ACT)	 AG	1122-1381	GT	TGG
(GAT)	 AG	3421-3594	TT	GAT
-recovered snap_scaffold_469-snap.3-T1, terminal, 3421, 3594
-recovered snap_scaffold_469-snap.3-T1, internal, 1122, 1381
Valid prediction for GlimmerHMM_glimmerT_60386-T1
Couldn't classify 6500, 6691
Sorry, prediction Augustus_model.g39977.t1 fails validation.
(ATG)	 GA	6007-6030	GT	AGG
(AGC)	 AG	6500-6691	GT	AGG
-recovered Augustus_model.g39977.t1, initial, 6007, 6030
-recovered Augustus_model.g39977.t1, internal, 6500, 6691
Valid prediction for GlimmerHMM_glimmerT_60385-T1
Couldn't classify 6500, 6691
Sorry, prediction snap_scaffold_469-snap.1-T1 fails validation.
(ATG)	 AG	3729-3850	GT	AGG
(TTG)	 AG	5138-5153	GT	GGG
(AGA)	 AG	5437-5595	GT	AGG
(AGC)	 AG	6500-6691	GT	AGG
-recovered snap_scaffold_469-snap.1-T1, initial, 3729, 3850
-recovered snap_scaffold_469-snap.1-T1, internal, 3729, 3850
-recovered snap_scaffold_469-snap.1-T1, internal, 5138, 5153
-recovered snap_scaffold_469-snap.1-T1, internal, 5437, 5595
-recovered snap_scaffold_469-snap.1-T1, internal, 6500, 6691
Couldn't classify 1122, 1381
Sorry, prediction GlimmerHMM_glimmerT_60387-T1 fails validation.
(ACT)	 AG	1122-1381	GT	TGG
(TGG)	 AG	2114-2161	TA	GAT
-recovered GlimmerHMM_glimmerT_60387-T1, terminal, 2114, 2161
-recovered GlimmerHMM_glimmerT_60387-T1, internal, 1122, 1381

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3016, rend_intergenic: 135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5592, rend_intergenic: 3151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6744
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3016, rend_intergenic: 135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5592, rend_intergenic: 3151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support