-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_467

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6448, 6597
Sorry, prediction snap_scaffold_467-snap.2-T1 fails validation.
(ATG)	 AC	722-774	GT	AGG
(CTT)	 AG	2130-2800	GT	GGG
(CCA)	 AG	2995-3113	GT	TGG
(GGT)	 AG	3132-3233	GT	GGG
(CAT)	 AG	6448-6597	GT	AGG
-recovered snap_scaffold_467-snap.2-T1, initial, 722, 774
-recovered snap_scaffold_467-snap.2-T1, internal, 2130, 2800
-recovered snap_scaffold_467-snap.2-T1, internal, 2995, 3113
-recovered snap_scaffold_467-snap.2-T1, internal, 3132, 3233
-recovered snap_scaffold_467-snap.2-T1, internal, 6448, 6597

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6623, 6710
Sorry, prediction Augustus_model.g39974.t1 fails validation.
(ATG)	 GC	3582-3681	GT	CCG
(CTG)	 AG	3963-4072	GT	AGG
(GTG)	 AG	4509-4667	GT	CGG
(CTG)	 AG	4992-5069	GT	TGG
(AGG)	 AG	5926-6012	GT	AGG
(GGT)	 AG	6623-6710	GT	GGG
-recovered Augustus_model.g39974.t1, initial, 3582, 3681
-recovered Augustus_model.g39974.t1, internal, 3963, 4072
-recovered Augustus_model.g39974.t1, internal, 4509, 4667
-recovered Augustus_model.g39974.t1, internal, 4992, 5069
-recovered Augustus_model.g39974.t1, internal, 5926, 6012
-recovered Augustus_model.g39974.t1, internal, 6623, 6710
Couldn't classify 3539, 3681
Sorry, prediction GlimmerHMM_glimmerT_60381-T1 fails validation.
(CCT)	 AG	3539-3681	GT	CCG
(CTG)	 AG	3963-4072	GT	AGG
(GTG)	 AG	4509-4667	GT	CGG
(AGG)	 AG	5926-6066	CA	GAC
-recovered GlimmerHMM_glimmerT_60381-T1, terminal, 5926, 6066
-recovered GlimmerHMM_glimmerT_60381-T1, internal, 3539, 3681
-recovered GlimmerHMM_glimmerT_60381-T1, internal, 3963, 4072
-recovered GlimmerHMM_glimmerT_60381-T1, internal, 4509, 4667
Couldn't classify 3539, 3681
Couldn't classify 6642, 6718
Sorry, prediction snap_scaffold_467-snap.1-T1 fails validation.
(CCT)	 AG	3539-3681	GT	CCG
(CTG)	 AG	3963-4072	GT	AGG
(GTG)	 AG	4509-4667	GT	CGG
(CTG)	 AG	4992-5069	GT	TGG
(AGG)	 AG	5926-6012	GT	AGG
(GAC)	 AG	6435-6623	GT	GGG
(GGA)	 AG	6642-6718	GT	TAG
-recovered snap_scaffold_467-snap.1-T1, internal, 3539, 3681
-recovered snap_scaffold_467-snap.1-T1, internal, 3963, 4072
-recovered snap_scaffold_467-snap.1-T1, internal, 4509, 4667
-recovered snap_scaffold_467-snap.1-T1, internal, 4992, 5069
-recovered snap_scaffold_467-snap.1-T1, internal, 5926, 6012
-recovered snap_scaffold_467-snap.1-T1, internal, 6435, 6623
-recovered snap_scaffold_467-snap.1-T1, internal, 6642, 6718
Couldn't classify 3462, 3681
Couldn't classify 5926, 6012
Sorry, prediction pasa_asmbl_43729.p1 fails validation.
(CAC)	 CA	3462-3681	GT	CCG
(CTG)	 AG	3963-4072	GT	AGG
(GTG)	 AG	4509-4667	GT	CGG
(CTG)	 AG	4992-5069	GT	TGG
(AGG)	 AG	5926-6012	GT	AGG
-recovered pasa_asmbl_43729.p1, internal, 3963, 4072
-recovered pasa_asmbl_43729.p1, internal, 4509, 4667
-recovered pasa_asmbl_43729.p1, internal, 4992, 5069
-recovered pasa_asmbl_43729.p1, internal, 5926, 6012

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3219, rend_intergenic: 722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6757
-exon list size: 23


building trellis

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28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3219, rend_intergenic: 722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support