-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_466

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3589, 3703
Sorry, prediction snap_scaffold_466-snap.1-T1 fails validation.
(CAT)	 AG	3589-3703	GT	GGG
(ACG)	 AG	5973-6127	AA	AGA
-recovered snap_scaffold_466-snap.1-T1, terminal, 5973, 6127
-recovered snap_scaffold_466-snap.1-T1, internal, 3589, 3703
Couldn't classify 5973, 6074
Sorry, prediction GlimmerHMM_glimmerT_60380-T1 fails validation.
(ATG)	 AT	1153-1180	GT	AGG
(ACG)	 AG	5973-6074	GT	AGG
-recovered GlimmerHMM_glimmerT_60380-T1, initial, 1153, 1180
-recovered GlimmerHMM_glimmerT_60380-T1, internal, 5973, 6074

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6760
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support