-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_465

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 26, 465
Couldn't classify 4144, 4296
Sorry, prediction snap_scaffold_465-snap.1-T1 fails validation.
(GAG)	 AG	26-465	GT	TTG
(GGC)	 AG	588-702	GT	AAG
(GAG)	 AG	2757-3258	GT	ACG
(AAT)	 AG	3942-4072	GT	CGG
(GTC)	 AG	4144-4296	GT	GGG
-recovered snap_scaffold_465-snap.1-T1, internal, 26, 465
-recovered snap_scaffold_465-snap.1-T1, internal, 588, 702
-recovered snap_scaffold_465-snap.1-T1, internal, 2757, 3258
-recovered snap_scaffold_465-snap.1-T1, internal, 3942, 4072
-recovered snap_scaffold_465-snap.1-T1, internal, 4144, 4296

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60378-T1
Valid prediction for snap_scaffold_465-snap.2-T1
add_exon() Sorry, snap_scaffold_465-snap.2-T1 1615-2003-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_60379-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6768
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support