-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_464

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39971.t1
Valid prediction for HiQ_model.g39972.t1
Valid prediction for GlimmerHMM_glimmerT_60376-T1
Valid prediction for CodingQuarry_transcript_49462-T1
Valid prediction for snap_scaffold_464-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_464-snap.3-T1
Couldn't classify 354, 470
Sorry, prediction GlimmerHMM_glimmerT_60377-T1 fails validation.
(CTG)	 AG	354-470	GT	AGG
(GCT)	 AG	754-831	GT	AGG
(GCC)	 AG	966-1088	GT	AGG
(ATT)	 AG	1216-1322	GT	TGG
(GGC)	 AG	1675-1756	GT	AGG
(GTC)	 AG	1879-1962	GT	AGG
(GTG)	 AG	2099-2181	GT	TGG
(GGG)	 AG	2315-2357	AG	GAA
-recovered GlimmerHMM_glimmerT_60377-T1, terminal, 2315, 2357
-recovered GlimmerHMM_glimmerT_60377-T1, internal, 354, 470
-recovered GlimmerHMM_glimmerT_60377-T1, internal, 754, 831
-recovered GlimmerHMM_glimmerT_60377-T1, internal, 966, 1088
-recovered GlimmerHMM_glimmerT_60377-T1, internal, 1216, 1322
-recovered GlimmerHMM_glimmerT_60377-T1, internal, 1675, 1756
-recovered GlimmerHMM_glimmerT_60377-T1, internal, 1879, 1962
-recovered GlimmerHMM_glimmerT_60377-T1, internal, 2099, 2181
Couldn't classify 6073, 6178
Sorry, prediction snap_scaffold_464-snap.1-T1 fails validation.
(ATG)	 AC	4076-4133	GT	TGG
(GTT)	 AG	4522-4594	GT	TGG
(CAC)	 AG	6073-6178	GT	GGG
-recovered snap_scaffold_464-snap.1-T1, initial, 4076, 4133
-recovered snap_scaffold_464-snap.1-T1, internal, 4522, 4594
-recovered snap_scaffold_464-snap.1-T1, internal, 6073, 6178
Valid prediction for Augustus_model.g39973.t1
Couldn't classify 1273, 1322
Sorry, prediction pasa_asmbl_43725.p1 fails validation.
(GGC)	 AG	1273-1322	GT	TGG
(GGC)	 AG	1675-1756	GT	AGG
(GTC)	 AG	1879-1962	GT	AGG
(GTG)	 AG	2099-2181	GT	TGG
(GGG)	 AG	2315-2357	AG	GAA
-recovered pasa_asmbl_43725.p1, terminal, 2315, 2357
-recovered pasa_asmbl_43725.p1, internal, 1273, 1322
-recovered pasa_asmbl_43725.p1, internal, 1675, 1756
-recovered pasa_asmbl_43725.p1, internal, 1879, 1962
-recovered pasa_asmbl_43725.p1, internal, 2099, 2181

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2697, rend_intergenic: 1143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6772
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 2697, rend_intergenic: 1143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support