-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_463

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1872, 2239
Sorry, prediction snap_scaffold_463-snap.1-T1 fails validation.
(ACA)	 AG	1872-2239	GT	GGG
(GAA)	 AG	2420-3698	GT	CGG
(GTG)	 AG	4748-4797	GT	ATG
(CAT)	 AG	4910-4931	TT	GAT
-recovered snap_scaffold_463-snap.1-T1, terminal, 4910, 4931
-recovered snap_scaffold_463-snap.1-T1, internal, 1872, 2239
-recovered snap_scaffold_463-snap.1-T1, internal, 2420, 3698
-recovered snap_scaffold_463-snap.1-T1, internal, 4748, 4797

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60374-T1
Couldn't classify 1834, 1927
Sorry, prediction snap_scaffold_463-snap.2-T1 fails validation.
(AAA)	 AG	1834-1927	GT	AGG
(TCC)	 AG	2010-2137	GT	AGG
(AGA)	 AG	3126-3239	TG	GAT
-recovered snap_scaffold_463-snap.2-T1, terminal, 3126, 3239
-recovered snap_scaffold_463-snap.2-T1, internal, 1834, 1927
-recovered snap_scaffold_463-snap.2-T1, internal, 2010, 2137
Valid prediction for Augustus_model.g39970.t1
Couldn't classify 1834, 1927
Sorry, prediction GlimmerHMM_glimmerT_60375-T1 fails validation.
(AAA)	 AG	1834-1927	GT	AGG
(TCC)	 AG	2010-2137	GT	AGG
(AGA)	 AG	3126-3239	TG	GAT
-recovered GlimmerHMM_glimmerT_60375-T1, terminal, 3126, 3239
-recovered GlimmerHMM_glimmerT_60375-T1, internal, 1834, 1927
-recovered GlimmerHMM_glimmerT_60375-T1, internal, 2010, 2137

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4931, rend_intergenic: 3544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6782
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4931, rend_intergenic: 3544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support