-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_462

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_462-snap.2-T1
Valid prediction for snap_scaffold_462-snap.3-T1
Sorry, intron length (8) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6461, 6594
Sorry, prediction snap_scaffold_462-snap.1-T1 fails validation.
(ATG)	 GT	1178-1257	GT	CGG
(GAG)	 AG	1651-1759	GT	AGG
(GGC)	 AG	1923-2045	GT	AGG
(GTG)	 AG	2420-2656	GT	AGG
(ACT)	 AG	3106-3315	GT	CGG
(CTG)	 AG	3723-3849	GT	AGG
(CTC)	 AG	6461-6594	GT	AGG
-recovered snap_scaffold_462-snap.1-T1, initial, 1178, 1257
-recovered snap_scaffold_462-snap.1-T1, internal, 1651, 1759
-recovered snap_scaffold_462-snap.1-T1, internal, 1923, 2045
-recovered snap_scaffold_462-snap.1-T1, internal, 2420, 2656
-recovered snap_scaffold_462-snap.1-T1, internal, 3106, 3315
-recovered snap_scaffold_462-snap.1-T1, internal, 3723, 3849
-recovered snap_scaffold_462-snap.1-T1, internal, 6461, 6594
Couldn't classify 113, 570
Couldn't classify 6461, 6594
Sorry, prediction Augustus_model.g39969.t1 fails validation.
(ACA)	 AG	113-570	GT	TGG
(CTT)	 AG	1604-1759	GT	AGG
(GGC)	 AG	1923-2045	GT	AGG
(GTG)	 AG	2420-2656	GT	AGG
(CTG)	 AG	3723-3849	GT	AGG
(CTC)	 AG	6461-6594	GT	AGG
-recovered Augustus_model.g39969.t1, internal, 113, 570
-recovered Augustus_model.g39969.t1, internal, 1604, 1759
-recovered Augustus_model.g39969.t1, internal, 1923, 2045
-recovered Augustus_model.g39969.t1, internal, 2420, 2656
-recovered Augustus_model.g39969.t1, internal, 3723, 3849
-recovered Augustus_model.g39969.t1, internal, 6461, 6594
Couldn't classify 90, 747
Sorry, prediction GlimmerHMM_glimmerT_60373-T1 fails validation.
(GAT)	 AG	90-747	GT	GGG
(CTT)	 AG	1604-1759	GT	AGG
(GGC)	 AG	1923-2045	GT	AGG
(GTG)	 AG	2420-2656	GT	AGG
(CTG)	 AG	3723-3849	GT	AGG
(CTC)	 AG	6461-6660	CA	AAC
-recovered GlimmerHMM_glimmerT_60373-T1, terminal, 6461, 6660
-recovered GlimmerHMM_glimmerT_60373-T1, internal, 90, 747
-recovered GlimmerHMM_glimmerT_60373-T1, internal, 1604, 1759
-recovered GlimmerHMM_glimmerT_60373-T1, internal, 1923, 2045
-recovered GlimmerHMM_glimmerT_60373-T1, internal, 2420, 2656
-recovered GlimmerHMM_glimmerT_60373-T1, internal, 3723, 3849

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5612, rend_intergenic: 315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6789
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5612, rend_intergenic: 315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support