-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_46

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59572-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g39450.t1
Valid prediction for GlimmerHMM_glimmerT_59567-T1
Couldn't classify 29285, 29537
Sorry, prediction snap_scaffold_46-snap.9-T1 fails validation.
(ATG)	 TG	29145-29199	GT	AGG
(GTG)	 AG	29285-29537	GT	ATG
-recovered snap_scaffold_46-snap.9-T1, initial, 29145, 29199
-recovered snap_scaffold_46-snap.9-T1, internal, 29285, 29537
Valid prediction for GlimmerHMM_glimmerT_59566-T1
Valid prediction for snap_scaffold_46-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59568-T1
Valid prediction for Augustus_model.g39455.t1
Valid prediction for snap_scaffold_46-snap.7-T1
Valid prediction for Augustus_model.g39453.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59571-T1
Valid prediction for snap_scaffold_46-snap.5-T1
Couldn't classify 29148, 29760
Sorry, prediction Augustus_model.g39449.t1 fails validation.
(ATG)	 GA	28469-28489	GT	AAG
(ACT)	 AG	29148-29760		TG
-recovered Augustus_model.g39449.t1, initial, 28469, 28489
Valid prediction for Augustus_model.g39452.t1
Valid prediction for Augustus_model.g39451.t1
Couldn't classify 315, 480
Sorry, prediction GlimmerHMM_glimmerT_59573-T1 fails validation.
(AGT)	 AG	315-480	GT	GTG
(GGT)	 AG	3313-3422	GT	CTG
(CGT)	 AG	4106-4275	GT	CAG
(CCC)	 AG	4614-4774	GT	GGG
(GTG)	 AG	4969-5179	GT	AGG
(GTA)	 AG	5762-6052	GT	CAG
(GTC)	 AG	6175-6401	TG	GAT
add_exon() Sorry, GlimmerHMM_glimmerT_59573-T1 4969-5179-terminal-3 is invalid.
-recovered GlimmerHMM_glimmerT_59573-T1, terminal, 4969, 5179
-recovered GlimmerHMM_glimmerT_59573-T1, terminal, 6175, 6401
-recovered GlimmerHMM_glimmerT_59573-T1, internal, 315, 480
-recovered GlimmerHMM_glimmerT_59573-T1, internal, 3313, 3422
-recovered GlimmerHMM_glimmerT_59573-T1, internal, 4106, 4275
-recovered GlimmerHMM_glimmerT_59573-T1, internal, 4614, 4774
-recovered GlimmerHMM_glimmerT_59573-T1, internal, 4969, 5179
-recovered GlimmerHMM_glimmerT_59573-T1, internal, 5762, 6052
Valid prediction for GlimmerHMM_glimmerT_59569-T1
Valid prediction for snap_scaffold_46-snap.6-T1
Valid prediction for GlimmerHMM_glimmerT_59570-T1
Valid prediction for snap_scaffold_46-snap.8-T1
Valid prediction for snap_scaffold_46-snap.3-T1
Valid prediction for Augustus_model.g39454.t1
Valid prediction for snap_scaffold_46-snap.4-T1
Couldn't classify 29148, 29717
Sorry, prediction snap_scaffold_46-snap.1-T1 fails validation.
(ATG)	 CT	28779-28796	GT	CGG
(ACT)	 AG	29148-29717	GT	GAG
-recovered snap_scaffold_46-snap.1-T1, initial, 28779, 28796
-recovered snap_scaffold_46-snap.1-T1, internal, 29148, 29717

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25202, rend_intergenic: 21353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 29760
-exon list size: 94


building trellis

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97.9    
99.0    
-found 9 predictions from path traversal
Error with prediction: snap lend_intergenic: 25202, rend_intergenic: 21353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support