-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_457

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_457-snap.3-T1
Couldn't classify 4409, 4516
Sorry, prediction GlimmerHMM_glimmerT_60368-T1 fails validation.
(ATG)	 AT	3374-3596	GT	TGG
(GCT)	 AG	4409-4516	GT	TGG
-recovered GlimmerHMM_glimmerT_60368-T1, initial, 3374, 3596
-recovered GlimmerHMM_glimmerT_60368-T1, internal, 4409, 4516
Couldn't classify 88, 200
Sorry, prediction Augustus_model.g39964.t1 fails validation.
(AGA)	 AG	88-200	GT	GGG
(GGC)	 AG	2162-2452	CA	AAC
-recovered Augustus_model.g39964.t1, terminal, 2162, 2452
-recovered Augustus_model.g39964.t1, internal, 88, 200
Couldn't classify 42, 200
Sorry, prediction snap_scaffold_457-snap.1-T1 fails validation.
(AAC)	 AG	42-200	GT	GGG
(GGC)	 AG	327-589	GT	AGG
(GAG)	 AG	1488-1586	GT	AAG
(GGC)	 AG	2162-2452	CA	AAC
-recovered snap_scaffold_457-snap.1-T1, terminal, 2162, 2452
-recovered snap_scaffold_457-snap.1-T1, internal, 42, 200
-recovered snap_scaffold_457-snap.1-T1, internal, 327, 589
-recovered snap_scaffold_457-snap.1-T1, internal, 1488, 1586
Valid prediction for GlimmerHMM_glimmerT_60367-T1
Valid prediction for Augustus_model.g39965.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6710, 6771
Sorry, prediction snap_scaffold_457-snap.2-T1 fails validation.
(ATG)	 TG	4411-4416	GT	AAG
(AGT)	 AG	4443-4571	GT	AGG
(GCT)	 AG	6710-6771	GT	AGG
-recovered snap_scaffold_457-snap.2-T1, initial, 4411, 4416
-recovered snap_scaffold_457-snap.2-T1, internal, 4443, 4571
-recovered snap_scaffold_457-snap.2-T1, internal, 6710, 6771

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2452, rend_intergenic: 82  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6852
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2452, rend_intergenic: 82  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support