-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_453

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 505, 659
Sorry, prediction snap_scaffold_453-snap.2-T1 fails validation.
(ATC)	 AG	505-659	GT	CAG
(GGG)	 AG	3572-3727	GT	GGG
(AAA)	 AG	5880-6037	AT	AGA
-recovered snap_scaffold_453-snap.2-T1, terminal, 5880, 6037
-recovered snap_scaffold_453-snap.2-T1, internal, 505, 659
-recovered snap_scaffold_453-snap.2-T1, internal, 3572, 3727

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_453-snap.3-T1
Couldn't classify 6522, 6644
Sorry, prediction snap_scaffold_453-snap.1-T1 fails validation.
(ATG)	 AA	5046-5054	GT	ATG
(GTA)	 AG	5756-5892	GT	GGG
(ATT)	 AG	6283-6411	GT	TTG
(AAT)	 AG	6522-6644	GT	GGG
-recovered snap_scaffold_453-snap.1-T1, initial, 5046, 5054
-recovered snap_scaffold_453-snap.1-T1, internal, 5756, 5892
-recovered snap_scaffold_453-snap.1-T1, internal, 6283, 6411
-recovered snap_scaffold_453-snap.1-T1, internal, 6522, 6644

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1830, rend_intergenic: 505  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6037, rend_intergenic: 2695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6875
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1830, rend_intergenic: 505  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6037, rend_intergenic: 2695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support