-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_452

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_452-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60361-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_452-snap.2-T1
Sorry, intron length (9) is less than minimum required (10)
Couldn't classify 2984, 3301
Sorry, prediction pasa_asmbl_43720.p1 fails validation.
(AGT)	 TC	2984-3301	TG	TAT
Couldn't classify 1347, 1588
Sorry, prediction GlimmerHMM_glimmerT_60362-T1 fails validation.
(TCA)	 AG	1347-1588	GT	AGG
(GTC)	 AG	2187-2534	GT	AGG
(ACA)	 AG	2615-3039	TG	GAT
-recovered GlimmerHMM_glimmerT_60362-T1, terminal, 2615, 3039
-recovered GlimmerHMM_glimmerT_60362-T1, internal, 1347, 1588
-recovered GlimmerHMM_glimmerT_60362-T1, internal, 2187, 2534
Valid prediction for Augustus_model.g39961.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6685, rend_intergenic: 2180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6903
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6685, rend_intergenic: 2180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support