-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_447

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_447-snap.3-T1
Valid prediction for Augustus_model.g39957.t1
Couldn't classify 2372, 2476
Sorry, prediction snap_scaffold_447-snap.1-T1 fails validation.
(CTT)	 AG	2372-2476	GT	AGG
(GTG)	 AG	2605-2763	GT	AGG
(GCC)	 AG	3134-3217	GT	AGG
(ACG)	 AG	3621-3854	GA	AGG
-recovered snap_scaffold_447-snap.1-T1, terminal, 3621, 3854
-recovered snap_scaffold_447-snap.1-T1, internal, 2372, 2476
-recovered snap_scaffold_447-snap.1-T1, internal, 2605, 2763
-recovered snap_scaffold_447-snap.1-T1, internal, 3134, 3217
Valid prediction for GlimmerHMM_glimmerT_60355-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_447-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3854, rend_intergenic: 2601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5028, rend_intergenic: 3929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6936
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3854, rend_intergenic: 2601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5028, rend_intergenic: 3929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support