-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_444

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5082, 5152
Sorry, prediction GlimmerHMM_glimmerT_60349-T1 fails validation.
(ATG)	 TA	4391-4472	GT	CAG
(CTC)	 AG	5082-5152	GT	CTG
-recovered GlimmerHMM_glimmerT_60349-T1, initial, 4391, 4472
-recovered GlimmerHMM_glimmerT_60349-T1, internal, 5082, 5152
Couldn't classify 6680, 6856
Sorry, prediction snap_scaffold_444-snap.1-T1 fails validation.
(ATG)	 AC	4661-4701	GT	ATG
(GGC)	 AG	4824-4887	GT	GGG
(CTC)	 AG	5082-5152	GT	CTG
(AAA)	 AG	6314-6480	GT	AGG
(GAT)	 AG	6680-6856	GT	AGG
-recovered snap_scaffold_444-snap.1-T1, initial, 4661, 4701
-recovered snap_scaffold_444-snap.1-T1, internal, 4824, 4887
-recovered snap_scaffold_444-snap.1-T1, internal, 5082, 5152
-recovered snap_scaffold_444-snap.1-T1, internal, 6314, 6480
-recovered snap_scaffold_444-snap.1-T1, internal, 6680, 6856

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39953.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6942
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support