-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_441

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 251, 320
Sorry, prediction snap_scaffold_441-snap.1-T1 fails validation.
(CGT)	 AG	251-320	GT	CGG
(ATC)	 AG	571-756	GT	CAG
(ACA)	 AG	2341-2472	GT	TCG
(ATG)	 AG	4047-4156	GT	CCG
(TGG)	 AG	4688-5260	GT	ATG
(ACC)	 AG	6869-6971	AG	AGA
-recovered snap_scaffold_441-snap.1-T1, initial, 4047, 4156
-recovered snap_scaffold_441-snap.1-T1, terminal, 6869, 6971
-recovered snap_scaffold_441-snap.1-T1, internal, 251, 320
-recovered snap_scaffold_441-snap.1-T1, internal, 571, 756
-recovered snap_scaffold_441-snap.1-T1, internal, 2341, 2472
-recovered snap_scaffold_441-snap.1-T1, internal, 4047, 4156
-recovered snap_scaffold_441-snap.1-T1, internal, 4688, 5260

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1650, 2320
Sorry, prediction snap_scaffold_441-snap.2-T1 fails validation.
(CTG)	 AG	1650-2320	GT	GGG
(GTG)	 AG	2724-2957	GT	AGG
(CTC)	 AG	6221-6415	GG	GAG
-recovered snap_scaffold_441-snap.2-T1, terminal, 6221, 6415
-recovered snap_scaffold_441-snap.2-T1, internal, 1650, 2320
-recovered snap_scaffold_441-snap.2-T1, internal, 2724, 2957
Valid prediction for Augustus_model.g39952.t1
Valid prediction for GlimmerHMM_glimmerT_60348-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6971, rend_intergenic: 567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6981
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6971, rend_intergenic: 567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support