-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_435

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39946.t1
Couldn't classify 6473, 6528
Sorry, prediction GlimmerHMM_glimmerT_60341-T1 fails validation.
(ATG)	 GG	1722-1893	GT	TGG
(CCG)	 AG	2310-2379	GT	GAG
(AGT)	 AG	2686-2746	GT	AGG
(GTG)	 AG	2995-3112	GT	CAG
(GTG)	 AG	3649-3729	GT	AGG
(GTG)	 AG	4112-4265	GT	AGG
(CAT)	 AG	6103-6241	GT	CGG
(CAT)	 AG	6473-6528	GT	AGG
-recovered GlimmerHMM_glimmerT_60341-T1, initial, 1722, 1893
-recovered GlimmerHMM_glimmerT_60341-T1, internal, 2310, 2379
-recovered GlimmerHMM_glimmerT_60341-T1, internal, 2686, 2746
-recovered GlimmerHMM_glimmerT_60341-T1, internal, 2995, 3112
-recovered GlimmerHMM_glimmerT_60341-T1, internal, 3649, 3729
-recovered GlimmerHMM_glimmerT_60341-T1, internal, 4112, 4265
-recovered GlimmerHMM_glimmerT_60341-T1, internal, 6103, 6241
-recovered GlimmerHMM_glimmerT_60341-T1, internal, 6473, 6528
Couldn't classify 6881, 6964
Sorry, prediction Augustus_model.g39947.t1 fails validation.
(ATG)	 GG	1722-1893	GT	TGG
(CCG)	 AG	2310-2379	GT	GAG
(AGT)	 AG	2686-2746	GT	AGG
(GTG)	 AG	2995-3096	GT	AGG
(CAC)	 AG	3854-3902	GT	AGG
(GTG)	 AG	4112-4265	GT	AGG
(CAT)	 AG	6103-6241	GT	CGG
(CAT)	 AG	6473-6528	GT	AGG
(GAA)	 AG	6606-6672	GT	AGG
(GTG)	 AG	6881-6964	GT	AGG
-recovered Augustus_model.g39947.t1, initial, 1722, 1893
-recovered Augustus_model.g39947.t1, internal, 2310, 2379
-recovered Augustus_model.g39947.t1, internal, 2686, 2746
-recovered Augustus_model.g39947.t1, internal, 2995, 3096
-recovered Augustus_model.g39947.t1, internal, 3854, 3902
-recovered Augustus_model.g39947.t1, internal, 4112, 4265
-recovered Augustus_model.g39947.t1, internal, 6103, 6241
-recovered Augustus_model.g39947.t1, internal, 6473, 6528
-recovered Augustus_model.g39947.t1, internal, 6606, 6672
-recovered Augustus_model.g39947.t1, internal, 6881, 6964
Couldn't classify 6881, 6964
Sorry, prediction snap_scaffold_435-snap.1-T1 fails validation.
(ATG)	 GG	1722-1893	GT	TGG
(CCG)	 AG	2310-2379	GT	GAG
(AGT)	 AG	2686-2746	GT	AGG
(GTG)	 AG	2995-3096	GT	AGG
(TGT)	 AG	3431-3452	GT	CTG
(GTG)	 AG	3649-3729	GT	AGG
(GTG)	 AG	4112-4265	GT	AGG
(CAT)	 AG	6103-6241	GT	CGG
(CAT)	 AG	6473-6528	GT	AGG
(GAA)	 AG	6606-6672	GT	AGG
(GTG)	 AG	6881-6964	GT	AGG
-recovered snap_scaffold_435-snap.1-T1, initial, 1722, 1893
-recovered snap_scaffold_435-snap.1-T1, internal, 2310, 2379
-recovered snap_scaffold_435-snap.1-T1, internal, 2686, 2746
-recovered snap_scaffold_435-snap.1-T1, internal, 2995, 3096
-recovered snap_scaffold_435-snap.1-T1, internal, 3431, 3452
-recovered snap_scaffold_435-snap.1-T1, internal, 3649, 3729
-recovered snap_scaffold_435-snap.1-T1, internal, 4112, 4265
-recovered snap_scaffold_435-snap.1-T1, internal, 6103, 6241
-recovered snap_scaffold_435-snap.1-T1, internal, 6473, 6528
-recovered snap_scaffold_435-snap.1-T1, internal, 6606, 6672
-recovered snap_scaffold_435-snap.1-T1, internal, 6881, 6964

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7009
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support