-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_434

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3285, 3402
Couldn't classify 6540, 6671
Sorry, prediction snap_scaffold_434-snap.2-T1 fails validation.
(AGT)	 AG	3285-3402	GT	AGG
(TTG)	 AG	6540-6671	GT	GGG
-recovered snap_scaffold_434-snap.2-T1, internal, 3285, 3402
-recovered snap_scaffold_434-snap.2-T1, internal, 6540, 6671

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 355, 487
Sorry, prediction GlimmerHMM_glimmerT_60340-T1 fails validation.
(GCA)	 AG	355-487	GT	AGG
(TCA)	 AG	3580-3774	GT	ACG
(GAT)	 AG	5004-5118	GT	AGG
(AGG)	 AG	5733-5794	GT	GAG
-recovered GlimmerHMM_glimmerT_60340-T1, terminal, 5733, 5794
-recovered GlimmerHMM_glimmerT_60340-T1, internal, 355, 487
-recovered GlimmerHMM_glimmerT_60340-T1, internal, 3580, 3774
-recovered GlimmerHMM_glimmerT_60340-T1, internal, 5004, 5118
-recovered GlimmerHMM_glimmerT_60340-T1, internal, 5733, 5794
Couldn't classify 3577, 3774
Couldn't classify 6564, 6615
Sorry, prediction pasa_asmbl_43703.p1 fails validation.
(CAG)	 TC	3577-3774	GT	ACG
(TAC)	 AG	4353-4385	GT	TGG
(GAT)	 AG	5004-5118	GT	AGG
(AGG)	 AG	5733-5790	GT	GCG
(GCT)	 AG	6564-6615	GG	GCG
-recovered pasa_asmbl_43703.p1, internal, 4353, 4385
-recovered pasa_asmbl_43703.p1, internal, 5004, 5118
-recovered pasa_asmbl_43703.p1, internal, 5733, 5790
Couldn't classify 1, 116
Couldn't classify 6564, 6659
Sorry, prediction Augustus_model.g39945.t1 fails validation.
(CTT)	 TT	1-116	GT	AAG
(GCA)	 AG	355-487	GT	AGG
(TCA)	 AG	3580-3774	GT	ACG
(TAC)	 AG	4353-4385	GT	TGG
(GAT)	 AG	5004-5118	GT	AGG
(AGG)	 AG	5733-5790	GT	GCG
(GCT)	 AG	6564-6659	GT	AAG
-recovered Augustus_model.g39945.t1, internal, 355, 487
-recovered Augustus_model.g39945.t1, internal, 3580, 3774
-recovered Augustus_model.g39945.t1, internal, 4353, 4385
-recovered Augustus_model.g39945.t1, internal, 5004, 5118
-recovered Augustus_model.g39945.t1, internal, 5733, 5790
-recovered Augustus_model.g39945.t1, internal, 6564, 6659
Couldn't classify 28, 116
Couldn't classify 6564, 6659
Sorry, prediction snap_scaffold_434-snap.1-T1 fails validation.
(CCC)	 AG	28-116	GT	AAG
(GCA)	 AG	355-543	GT	AAG
(ACC)	 AG	3624-3774	GT	ACG
(GAT)	 AG	5004-5118	GT	AGG
(AGG)	 AG	5733-5790	GT	GCG
(GCT)	 AG	6564-6659	GT	AAG
-recovered snap_scaffold_434-snap.1-T1, internal, 28, 116
-recovered snap_scaffold_434-snap.1-T1, internal, 355, 543
-recovered snap_scaffold_434-snap.1-T1, internal, 3624, 3774
-recovered snap_scaffold_434-snap.1-T1, internal, 5004, 5118
-recovered snap_scaffold_434-snap.1-T1, internal, 5733, 5790
-recovered snap_scaffold_434-snap.1-T1, internal, 6564, 6659
Couldn't classify 10, 116
Couldn't classify 355, 553
Sorry, prediction pasa_asmbl_43705.p1 fails validation.
(AGT)	 CT	10-116	GT	AAG
(GCA)	 AG	355-553	GC	TCG
-recovered pasa_asmbl_43705.p1, internal, 355, 553

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6993, rend_intergenic: 3285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7020
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6993, rend_intergenic: 3285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support