-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_433

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60338-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 947, 1351
Sorry, prediction GlimmerHMM_glimmerT_60339-T1 fails validation.
(ACA)	 AG	947-1351	GT	AGG
(GGA)	 AG	1555-1646	GG	GAG
-recovered GlimmerHMM_glimmerT_60339-T1, terminal, 1555, 1646
-recovered GlimmerHMM_glimmerT_60339-T1, internal, 947, 1351
Couldn't classify 1234, 1351
Sorry, prediction pasa_asmbl_43702.p1 fails validation.
(CAC)	 TA	1234-1351	GT	AGG
(GGA)	 AG	1555-1642	GT	AGG
(GAA)	 AG	1815-1869	GT	AGG
(GGG)	 AG	1957-2231	GT	CGG
(AGT)	 AG	2361-2427	AC	GAA
-recovered pasa_asmbl_43702.p1, terminal, 2361, 2427
-recovered pasa_asmbl_43702.p1, internal, 1555, 1642
-recovered pasa_asmbl_43702.p1, internal, 1815, 1869
-recovered pasa_asmbl_43702.p1, internal, 1957, 2231
Valid prediction for Augustus_model.g39944.t1
Couldn't classify 34, 237
Sorry, prediction snap_scaffold_433-snap.1-T1 fails validation.
(GTG)	 AG	34-237	GT	CAG
(GTA)	 AG	955-1351	GT	AGG
(GGA)	 AG	1555-1642	GT	AGG
(GAA)	 AG	1815-1869	GT	AGG
(GGG)	 AG	1957-1983	GT	ACG
(ACC)	 AG	2122-2231	GT	CGG
(AGT)	 AG	2361-2427	AC	GAA
-recovered snap_scaffold_433-snap.1-T1, terminal, 2361, 2427
-recovered snap_scaffold_433-snap.1-T1, internal, 34, 237
-recovered snap_scaffold_433-snap.1-T1, internal, 955, 1351
-recovered snap_scaffold_433-snap.1-T1, internal, 1555, 1642
-recovered snap_scaffold_433-snap.1-T1, internal, 1815, 1869
-recovered snap_scaffold_433-snap.1-T1, internal, 1957, 1983
-recovered snap_scaffold_433-snap.1-T1, internal, 2122, 2231

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7025
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support