-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_431

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60335-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60335-T1 5070-5737-terminal-1 is invalid.
Couldn't classify 634, 776
Couldn't classify 5070, 5733
Sorry, prediction snap_scaffold_431-snap.1-T1 fails validation.
(GGC)	 AG	634-776	GT	TAG
(GAG)	 AG	5070-5733	GT	AAG
-recovered snap_scaffold_431-snap.1-T1, internal, 634, 776
-recovered snap_scaffold_431-snap.1-T1, internal, 5070, 5733

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60336-T1
Couldn't classify 781, 1011
Sorry, prediction snap_scaffold_431-snap.2-T1 fails validation.
(ACA)	 AG	781-1011	GT	GTG
(CTG)	 AG	1323-1961	GT	GTG
(AAC)	 AG	2765-3230	TA	AAT
-recovered snap_scaffold_431-snap.2-T1, terminal, 2765, 3230
-recovered snap_scaffold_431-snap.2-T1, internal, 781, 1011
-recovered snap_scaffold_431-snap.2-T1, internal, 1323, 1961

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5733, rend_intergenic: 3809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7038
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5733, rend_intergenic: 3809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support