-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_430

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6751, 6993
Sorry, prediction snap_scaffold_430-snap.2-T1 fails validation.
(ATG)	 CC	1697-1799	GT	ACG
(GCC)	 AG	3679-3798	GT	CAG
(ATG)	 AG	6751-6993	GT	TGG
-recovered snap_scaffold_430-snap.2-T1, initial, 1697, 1799
add_exon() Sorry, snap_scaffold_430-snap.2-T1 6751-6993-initial-1 is invalid.
-recovered snap_scaffold_430-snap.2-T1, initial, 6751, 6993
-recovered snap_scaffold_430-snap.2-T1, internal, 3679, 3798
-recovered snap_scaffold_430-snap.2-T1, internal, 6751, 6993

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 232, 341
Sorry, prediction GlimmerHMM_glimmerT_60334-T1 fails validation.
(CCC)	 AG	232-341	GT	GGG
(GGA)	 AG	3758-3949	GT	TTG
(GCT)	 AG	5217-5312	GT	TGG
(CAT)	 AG	6746-7010	GA	GAG
-recovered GlimmerHMM_glimmerT_60334-T1, terminal, 6746, 7010
-recovered GlimmerHMM_glimmerT_60334-T1, internal, 232, 341
-recovered GlimmerHMM_glimmerT_60334-T1, internal, 3758, 3949
-recovered GlimmerHMM_glimmerT_60334-T1, internal, 5217, 5312
Valid prediction for snap_scaffold_430-snap.1-T1
Couldn't classify 232, 341
Sorry, prediction snap_scaffold_430-snap.3-T1 fails validation.
(CCC)	 AG	232-341	GT	GGG
(GGC)	 AG	3268-3384	AA	GAA
-recovered snap_scaffold_430-snap.3-T1, terminal, 3268, 3384
-recovered snap_scaffold_430-snap.3-T1, internal, 232, 341

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6993, rend_intergenic: 3658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7041
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6993, rend_intergenic: 3658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support