-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_43

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_43-snap.2-T1
Valid prediction for Augustus_model.g39445.t1
Valid prediction for GlimmerHMM_glimmerT_59555-T1
Couldn't classify 26870, 27242
Sorry, prediction snap_scaffold_43-snap.3-T1 fails validation.
(ATG)	 AC	18447-18452	GT	AGG
(GTG)	 AG	18725-18922	GT	TGG
(GCA)	 AG	18993-19140	GT	TGG
(GGT)	 AG	19385-19479	GT	AGG
(AAT)	 AG	25467-25827	GT	GAG
(ACA)	 AG	26870-27242	GT	AAG
-recovered snap_scaffold_43-snap.3-T1, initial, 18447, 18452
-recovered snap_scaffold_43-snap.3-T1, internal, 18725, 18922
-recovered snap_scaffold_43-snap.3-T1, internal, 18993, 19140
-recovered snap_scaffold_43-snap.3-T1, internal, 19385, 19479
-recovered snap_scaffold_43-snap.3-T1, internal, 25467, 25827
-recovered snap_scaffold_43-snap.3-T1, internal, 26870, 27242

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59553-T1
Couldn't classify 2975, 3092
Sorry, prediction snap_scaffold_43-snap.4-T1 fails validation.
(AGC)	 AG	2975-3092	GT	AGG
(GAT)	 AG	4079-4298	GT	TAG
(CTT)	 AG	5190-5198	GT	ATG
(GAA)	 AG	6883-7013	GT	AGG
(ATT)	 AG	7383-7607	GT	AGG
(AAC)	 AG	8282-8289	GT	GTG
(CGG)	 AG	8423-9070	GT	ATG
(CAT)	 AG	10675-10757	GT	TGG
(GGT)	 AG	11114-11582	GA	AGG
add_exon() Sorry, snap_scaffold_43-snap.4-T1 6883-7013-terminal-2 is invalid.
-recovered snap_scaffold_43-snap.4-T1, terminal, 6883, 7013
-recovered snap_scaffold_43-snap.4-T1, terminal, 11114, 11582
-recovered snap_scaffold_43-snap.4-T1, internal, 2975, 3092
-recovered snap_scaffold_43-snap.4-T1, internal, 4079, 4298
-recovered snap_scaffold_43-snap.4-T1, internal, 5190, 5198
-recovered snap_scaffold_43-snap.4-T1, internal, 6883, 7013
-recovered snap_scaffold_43-snap.4-T1, internal, 7383, 7607
-recovered snap_scaffold_43-snap.4-T1, internal, 8282, 8289
-recovered snap_scaffold_43-snap.4-T1, internal, 8423, 9070
-recovered snap_scaffold_43-snap.4-T1, internal, 10675, 10757
Valid prediction for GlimmerHMM_glimmerT_59556-T1
Valid prediction for snap_scaffold_43-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59554-T1
Valid prediction for Augustus_model.g39444.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15396, rend_intergenic: 2986  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27242, rend_intergenic: 20053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 31634
-exon list size: 45


building trellis

2.1    
4.3    
6.4    
8.5    
10.6    
12.8    
14.9    
17.0    
19.1    
21.3    
23.4    
25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
55.3    
57.4    
59.6    
61.7    
63.8    
66.0    
68.1    
70.2    
72.3    
74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 15396, rend_intergenic: 2986  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27242, rend_intergenic: 20053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support