-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_428

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60332-T1
Valid prediction for Augustus_model.g39941.t1
Valid prediction for snap_scaffold_428-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5795, 5912
Sorry, prediction pasa_asmbl_43692.p1 fails validation.
(GGA)	 CT	5795-5912	GT	AGG
(GGA)	 AG	6116-6203	GT	AGG
(GAA)	 AG	6376-6430	GT	AGG
(GGG)	 AG	6515-6562	GT	AGG
(AGT)	 AG	6660-6680	GG	GAG
-recovered pasa_asmbl_43692.p1, terminal, 6660, 6680
-recovered pasa_asmbl_43692.p1, internal, 6116, 6203
-recovered pasa_asmbl_43692.p1, internal, 6376, 6430
-recovered pasa_asmbl_43692.p1, internal, 6515, 6562
Valid prediction for Augustus_model.g39940.t1
Valid prediction for GlimmerHMM_glimmerT_60331-T1
Valid prediction for CodingQuarry_transcript_49449-T1
Couldn't classify 4683, 4815
Couldn't classify 5232, 5425
Sorry, prediction pasa_asmbl_43693.p1 fails validation.
(AGG)	 GC	4683-4815	GT	AGG
(ACA)	 AG	4896-5144	GT	GTG
(ACA)	 AG	5232-5425	CA	GAC
-recovered pasa_asmbl_43693.p1, internal, 4896, 5144
Valid prediction for snap_scaffold_428-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6366, rend_intergenic: 1909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7050
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6366, rend_intergenic: 1909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support