-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_426

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_426-snap.1-T1
Couldn't classify 6020, 6128
Sorry, prediction GlimmerHMM_glimmerT_60328-T1 fails validation.
(ATG)	 CG	4253-4277	GT	GGG
(GAA)	 AG	6020-6128	GT	GGG
-recovered GlimmerHMM_glimmerT_60328-T1, initial, 4253, 4277
-recovered GlimmerHMM_glimmerT_60328-T1, internal, 6020, 6128

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39938.t1
Valid prediction for GlimmerHMM_glimmerT_60327-T1
Couldn't classify 6484, 6627
Sorry, prediction snap_scaffold_426-snap.2-T1 fails validation.
(ATG)	 GG	903-1000	GT	AGG
(AGG)	 AG	4532-4602	GT	AGG
(CGG)	 AG	4703-4939	GT	AGG
(TCG)	 AG	6484-6627	GT	GAG
-recovered snap_scaffold_426-snap.2-T1, initial, 903, 1000
-recovered snap_scaffold_426-snap.2-T1, internal, 4532, 4602
-recovered snap_scaffold_426-snap.2-T1, internal, 4703, 4939
-recovered snap_scaffold_426-snap.2-T1, internal, 6484, 6627

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6615, rend_intergenic: 436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7062
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6615, rend_intergenic: 436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support