-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_425

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_425-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1044, 1131
Sorry, prediction snap_scaffold_425-snap.1-T1 fails validation.
(GCT)	 AG	1044-1131	GT	CGG
(CTG)	 AG	1476-1849	GT	TGG
(GCT)	 AG	3533-3657	GT	CTG
(TCT)	 AG	4288-4358	GT	GGG
(GGC)	 AG	6619-6661	AC	GAA
-recovered snap_scaffold_425-snap.1-T1, terminal, 6619, 6661
-recovered snap_scaffold_425-snap.1-T1, internal, 1044, 1131
-recovered snap_scaffold_425-snap.1-T1, internal, 1476, 1849
-recovered snap_scaffold_425-snap.1-T1, internal, 3533, 3657
-recovered snap_scaffold_425-snap.1-T1, internal, 4288, 4358
Couldn't classify 3533, 3657
Sorry, prediction GlimmerHMM_glimmerT_60326-T1 fails validation.
(GCT)	 AG	3533-3657	GT	CTG
(GAG)	 AG	3755-3853	CA	GAC
-recovered GlimmerHMM_glimmerT_60326-T1, terminal, 3755, 3853
-recovered GlimmerHMM_glimmerT_60326-T1, internal, 3533, 3657

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6031, rend_intergenic: 1269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7074
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6031, rend_intergenic: 1269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support