-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_424

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6127, 6189
Sorry, prediction GlimmerHMM_glimmerT_60325-T1 fails validation.
(ATG)	 CG	5254-5514	GT	ATG
(CAC)	 AG	6127-6189	GT	ACG
-recovered GlimmerHMM_glimmerT_60325-T1, initial, 5254, 5514
-recovered GlimmerHMM_glimmerT_60325-T1, internal, 6127, 6189
Couldn't classify 4144, 4259
Couldn't classify 6127, 6189
Sorry, prediction pasa_asmbl_43690.p2 fails validation.
(GAC)	 AG	4144-4259	GT	AGG
(GAA)	 AG	5192-5242	GT	AGG
(GTT)	 AG	5367-5514	GT	ATG
(CAC)	 AG	6127-6189	GT	ACG
-recovered pasa_asmbl_43690.p2, internal, 4144, 4259
-recovered pasa_asmbl_43690.p2, internal, 5192, 5242
-recovered pasa_asmbl_43690.p2, internal, 5367, 5514
-recovered pasa_asmbl_43690.p2, internal, 6127, 6189
Couldn't classify 362, 437
Couldn't classify 6127, 6189
Sorry, prediction snap_scaffold_424-snap.1-T1 fails validation.
(TCT)	 AG	362-437	GT	AGG
(GTT)	 AG	614-694	GT	ACG
(GAC)	 AG	4144-4259	GT	AGG
(GAA)	 AG	5192-5242	GT	AGG
(GTT)	 AG	5367-5514	GT	ATG
(CAC)	 AG	6127-6189	GT	ACG
-recovered snap_scaffold_424-snap.1-T1, internal, 362, 437
-recovered snap_scaffold_424-snap.1-T1, internal, 614, 694
-recovered snap_scaffold_424-snap.1-T1, internal, 4144, 4259
-recovered snap_scaffold_424-snap.1-T1, internal, 5192, 5242
-recovered snap_scaffold_424-snap.1-T1, internal, 5367, 5514
-recovered snap_scaffold_424-snap.1-T1, internal, 6127, 6189
Couldn't classify 362, 437
Sorry, prediction Augustus_model.g39937.t1 fails validation.
(TCT)	 AG	362-437	GT	AGG
(GAC)	 AG	4144-4259	GT	AGG
(GAA)	 AG	5192-5242	GT	AGG
(GTT)	 AG	5367-5514	GT	ATG
(CAC)	 AG	6127-6222	GT	GAG
-recovered Augustus_model.g39937.t1, terminal, 6127, 6222
-recovered Augustus_model.g39937.t1, internal, 362, 437
-recovered Augustus_model.g39937.t1, internal, 4144, 4259
-recovered Augustus_model.g39937.t1, internal, 5192, 5242
-recovered Augustus_model.g39937.t1, internal, 5367, 5514
-recovered Augustus_model.g39937.t1, internal, 6127, 6222
Valid prediction for GlimmerHMM_glimmerT_60324-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6245, 6410
Sorry, prediction snap_scaffold_424-snap.2-T1 fails validation.
(ATG)	 AC	1697-1914	GT	GGG
(GGA)	 AG	3860-3930	GT	AGG
(TCG)	 AG	6245-6410	GT	CGG
-recovered snap_scaffold_424-snap.2-T1, initial, 1697, 1914
-recovered snap_scaffold_424-snap.2-T1, internal, 3860, 3930
-recovered snap_scaffold_424-snap.2-T1, internal, 6245, 6410

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6189, rend_intergenic: 668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7077
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6189, rend_intergenic: 668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support