-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_423

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60323-T1
Couldn't classify 55, 173
Couldn't classify 6923, 7006
Sorry, prediction Augustus_model.g39936.t1 fails validation.
(GCT)	 AG	55-173	GT	AGG
(CAG)	 AG	671-878	GT	AGG
(GGC)	 AG	3932-4058	GT	AGG
(AAG)	 AG	5072-5121	GT	AGG
(CTG)	 AG	6180-6270	GT	CCG
(ATC)	 AG	6923-7006	GT	AGG
-recovered Augustus_model.g39936.t1, internal, 55, 173
-recovered Augustus_model.g39936.t1, internal, 671, 878
-recovered Augustus_model.g39936.t1, internal, 3932, 4058
-recovered Augustus_model.g39936.t1, internal, 5072, 5121
-recovered Augustus_model.g39936.t1, internal, 6180, 6270
-recovered Augustus_model.g39936.t1, internal, 6923, 7006
Couldn't classify 55, 173
Couldn't classify 6923, 7006
Sorry, prediction snap_scaffold_423-snap.1-T1 fails validation.
(GCT)	 AG	55-173	GT	AGG
(CAG)	 AG	671-986	GT	GGG
(GGC)	 AG	3932-4058	GT	AGG
(AAT)	 AG	4456-4471	GT	AGG
(AAG)	 AG	5072-6129	GT	TGG
(ATC)	 AG	6923-7006	GT	AGG
-recovered snap_scaffold_423-snap.1-T1, internal, 55, 173
-recovered snap_scaffold_423-snap.1-T1, internal, 671, 986
-recovered snap_scaffold_423-snap.1-T1, internal, 3932, 4058
-recovered snap_scaffold_423-snap.1-T1, internal, 4456, 4471
-recovered snap_scaffold_423-snap.1-T1, internal, 5072, 6129
-recovered snap_scaffold_423-snap.1-T1, internal, 6923, 7006

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6108, 6196
Sorry, prediction snap_scaffold_423-snap.2-T1 fails validation.
(ATG)	 CG	969-2063	GT	CAG
(AGA)	 AG	2292-2466	GT	TTG
(ACA)	 AG	3598-3660	GT	AGG
(TCC)	 AG	6108-6196	GT	AGG
-recovered snap_scaffold_423-snap.2-T1, initial, 969, 2063
-recovered snap_scaffold_423-snap.2-T1, internal, 2292, 2466
-recovered snap_scaffold_423-snap.2-T1, internal, 3598, 3660
-recovered snap_scaffold_423-snap.2-T1, internal, 6108, 6196

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7006, rend_intergenic: 892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7087
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7006, rend_intergenic: 892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support