-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_422

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60320-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60320-T1 939-1135-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_60321-T1
Valid prediction for Augustus_model.g39934.t1
add_exon() Sorry, Augustus_model.g39934.t1 939-1135-terminal-1 is invalid.
Couldn't classify 939, 1088
Couldn't classify 6421, 6675
Sorry, prediction snap_scaffold_422-snap.2-T1 fails validation.
(AGC)	 AG	939-1088	GT	TGG
(AAA)	 AG	3872-3926	GT	CGG
(CGG)	 AG	4009-4042	GT	CTG
(GCT)	 AG	6322-6396	GT	CTG
(GCC)	 AG	6421-6675	GT	TGG
-recovered snap_scaffold_422-snap.2-T1, internal, 939, 1088
-recovered snap_scaffold_422-snap.2-T1, internal, 3872, 3926
-recovered snap_scaffold_422-snap.2-T1, internal, 4009, 4042
-recovered snap_scaffold_422-snap.2-T1, internal, 6322, 6396
-recovered snap_scaffold_422-snap.2-T1, internal, 6421, 6675

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60322-T1
Valid prediction for Augustus_model.g39935.t1
Couldn't classify 6040, 6190
Sorry, prediction snap_scaffold_422-snap.1-T1 fails validation.
(ATG)	 AA	984-1124	GT	ATG
(ATA)	 AG	3813-3850	GT	AAG
(GCG)	 AG	6040-6190	GT	AGG
-recovered snap_scaffold_422-snap.1-T1, initial, 984, 1124
-recovered snap_scaffold_422-snap.1-T1, internal, 3813, 3850
-recovered snap_scaffold_422-snap.1-T1, internal, 6040, 6190

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6107, rend_intergenic: 939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7090
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6107, rend_intergenic: 939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support