-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_421

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1185, 1238
Couldn't classify 6893, 7001
Sorry, prediction pasa_asmbl_43687.p1 fails validation.
(GAG)	 GA	1185-1238	GT	AGG
(GGT)	 AG	2632-2841	GT	AGG
(TTC)	 AG	5769-5885	GT	AGG
(GTG)	 AG	6463-6521	GT	CAG
(ACC)	 AG	6632-6697	GT	GAG
(CGA)	 AG	6893-7001	GT	CGG
-recovered pasa_asmbl_43687.p1, internal, 2632, 2841
-recovered pasa_asmbl_43687.p1, internal, 5769, 5885
-recovered pasa_asmbl_43687.p1, internal, 6463, 6521
-recovered pasa_asmbl_43687.p1, internal, 6632, 6697
-recovered pasa_asmbl_43687.p1, internal, 6893, 7001
Couldn't classify 6893, 7001
Sorry, prediction Augustus_model.g39933.t1 fails validation.
(ATG)	 TA	2605-2841	GT	AGG
(TTC)	 AG	5769-5885	GT	AGG
(GTG)	 AG	6463-6521	GT	CAG
(ACC)	 AG	6632-6697	GT	GAG
(CGA)	 AG	6893-7001	GT	CGG
-recovered Augustus_model.g39933.t1, initial, 2605, 2841
-recovered Augustus_model.g39933.t1, internal, 5769, 5885
-recovered Augustus_model.g39933.t1, internal, 6463, 6521
-recovered Augustus_model.g39933.t1, internal, 6632, 6697
-recovered Augustus_model.g39933.t1, internal, 6893, 7001
Couldn't classify 6893, 7001
Sorry, prediction snap_scaffold_421-snap.2-T1 fails validation.
(ATG)	 AC	2638-2841	GT	AGG
(TTC)	 AG	5769-5885	GT	AGG
(GGC)	 AG	6648-6697	GT	GAG
(CGA)	 AG	6893-7001	GT	CGG
-recovered snap_scaffold_421-snap.2-T1, initial, 2638, 2841
-recovered snap_scaffold_421-snap.2-T1, internal, 5769, 5885
-recovered snap_scaffold_421-snap.2-T1, internal, 6648, 6697
-recovered snap_scaffold_421-snap.2-T1, internal, 6893, 7001
Valid prediction for GlimmerHMM_glimmerT_60319-T1
Couldn't classify 378, 522
Sorry, prediction snap_scaffold_421-snap.1-T1 fails validation.
(AGG)	 AG	378-522	GT	CAG
(GGA)	 AG	802-1116	GA	GAG
-recovered snap_scaffold_421-snap.1-T1, terminal, 802, 1116
-recovered snap_scaffold_421-snap.1-T1, internal, 378, 522

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 120, 212
Sorry, prediction snap_scaffold_421-snap.3-T1 fails validation.
(GTC)	 AG	120-212	GT	ATG
(GCA)	 AG	3850-4014	GT	AGG
(GTT)	 AG	4271-4318	TT	AGT
-recovered snap_scaffold_421-snap.3-T1, terminal, 4271, 4318
-recovered snap_scaffold_421-snap.3-T1, internal, 120, 212
-recovered snap_scaffold_421-snap.3-T1, internal, 3850, 4014

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7001, rend_intergenic: 2773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7090
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7001, rend_intergenic: 2773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support