-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_42

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_49444-T1
Couldn't classify 31011, 31088
Sorry, prediction GlimmerHMM_glimmerT_59552-T1 fails validation.
(ATG)	 CC	25651-25705	GT	TGG
(TCT)	 AG	26125-26270	GT	AGG
(ATC)	 AG	31011-31088	GT	TGG
-recovered GlimmerHMM_glimmerT_59552-T1, initial, 25651, 25705
-recovered GlimmerHMM_glimmerT_59552-T1, internal, 26125, 26270
-recovered GlimmerHMM_glimmerT_59552-T1, internal, 31011, 31088
Valid prediction for GlimmerHMM_glimmerT_59549-T1
Valid prediction for snap_scaffold_42-snap.1-T1
Valid prediction for snap_scaffold_42-snap.4-T1
Valid prediction for HiQ_model.g39443.t1
Valid prediction for snap_scaffold_42-snap.2-T1
Couldn't classify 385, 470
Sorry, prediction Augustus_model.g39441.t1 fails validation.
(TTT)	 AG	385-470	GT	TGG
(GTC)	 AG	2321-2543	AT	GAA
-recovered Augustus_model.g39441.t1, terminal, 2321, 2543
-recovered Augustus_model.g39441.t1, internal, 385, 470

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59550-T1
Valid prediction for Augustus_model.g39442.t1
Valid prediction for GlimmerHMM_glimmerT_59551-T1
Valid prediction for snap_scaffold_42-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 32365
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 4 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support