-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_418

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5356, 5622
Sorry, prediction GlimmerHMM_glimmerT_60316-T1 fails validation.
(ATG)	 TA	4199-4502	GT	TGG
(TGA)	 AG	4690-4848	GT	AAG
(GAT)	 AG	5356-5622	GT	TGG
-recovered GlimmerHMM_glimmerT_60316-T1, initial, 4199, 4502
-recovered GlimmerHMM_glimmerT_60316-T1, internal, 4690, 4848
-recovered GlimmerHMM_glimmerT_60316-T1, internal, 5356, 5622
Couldn't classify 72, 200
Sorry, prediction snap_scaffold_418-snap.1-T1 fails validation.
(ACT)	 AG	72-200	GT	CAG
(CCC)	 AG	3279-3383	AC	AAA
-recovered snap_scaffold_418-snap.1-T1, terminal, 3279, 3383
-recovered snap_scaffold_418-snap.1-T1, internal, 72, 200
Couldn't classify 5409, 5548
Sorry, prediction snap_scaffold_418-snap.3-T1 fails validation.
(ATG)	 TA	4199-4502	GT	TGG
(GAT)	 AG	4694-4848	GT	AAG
(GTG)	 AG	5409-5548	GT	AGG
-recovered snap_scaffold_418-snap.3-T1, initial, 4199, 4502
-recovered snap_scaffold_418-snap.3-T1, internal, 4694, 4848
-recovered snap_scaffold_418-snap.3-T1, internal, 5409, 5548

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4951, 5550
Sorry, prediction snap_scaffold_418-snap.2-T1 fails validation.
(ATG)	 GG	2587-2643	GT	CTG
(ACC)	 AG	3728-3913	GT	ATG
(AGG)	 AG	4951-5550	GT	GAG
-recovered snap_scaffold_418-snap.2-T1, initial, 2587, 2643
-recovered snap_scaffold_418-snap.2-T1, internal, 3728, 3913
-recovered snap_scaffold_418-snap.2-T1, internal, 4951, 5550

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3383, rend_intergenic: 1557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 4520, rend_intergenic: 4199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7106
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3383, rend_intergenic: 1557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 4520, rend_intergenic: 4199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support