-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_417

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60314-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_417-snap.3-T1
Couldn't classify 506, 615
Sorry, prediction GlimmerHMM_glimmerT_60315-T1 fails validation.
(AGG)	 AG	506-615	GT	ATG
(GCT)	 AG	906-1196	TC	AGT
-recovered GlimmerHMM_glimmerT_60315-T1, terminal, 906, 1196
-recovered GlimmerHMM_glimmerT_60315-T1, internal, 506, 615
Valid prediction for GlimmerHMM_glimmerT_60313-T1
Couldn't classify 6857, 7051
Sorry, prediction Augustus_model.g39930.t1 fails validation.
(ATG)	 CA	5839-6010	GT	CGG
(GAT)	 AG	6187-6314	GT	AGG
(GGA)	 AG	6401-6510	GT	CAG
(ACT)	 AG	6686-6720	GT	AGG
(ATG)	 AG	6857-7051	GT	AGG
-recovered Augustus_model.g39930.t1, initial, 5839, 6010
add_exon() Sorry, Augustus_model.g39930.t1 6857-7051-initial-1 is invalid.
-recovered Augustus_model.g39930.t1, initial, 6857, 7051
-recovered Augustus_model.g39930.t1, internal, 6187, 6314
-recovered Augustus_model.g39930.t1, internal, 6401, 6510
-recovered Augustus_model.g39930.t1, internal, 6686, 6720
-recovered Augustus_model.g39930.t1, internal, 6857, 7051
Valid prediction for Augustus_model.g39931.t1
Valid prediction for snap_scaffold_417-snap.2-T1
Couldn't classify 6857, 7051
Sorry, prediction snap_scaffold_417-snap.1-T1 fails validation.
(ATG)	 CA	5839-6010	GT	CGG
(GAT)	 AG	6187-6314	GT	AGG
(GGA)	 AG	6401-6521	GT	CAG
(ATG)	 AG	6857-7051	GT	AGG
-recovered snap_scaffold_417-snap.1-T1, initial, 5839, 6010
add_exon() Sorry, snap_scaffold_417-snap.1-T1 6857-7051-initial-1 is invalid.
-recovered snap_scaffold_417-snap.1-T1, initial, 6857, 7051
-recovered snap_scaffold_417-snap.1-T1, internal, 6187, 6314
-recovered snap_scaffold_417-snap.1-T1, internal, 6401, 6521
-recovered snap_scaffold_417-snap.1-T1, internal, 6857, 7051
Valid prediction for CodingQuarry_transcript_49441-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7145
-exon list size: 18


building trellis

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-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support