-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_416

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6831, 6986
Sorry, prediction snap_scaffold_416-snap.2-T1 fails validation.
(ATG)	 TC	3496-3529	GT	AAG
(GGC)	 AG	5853-5956	GT	TCG
(CCT)	 AG	6277-6444	GT	AGG
(CAG)	 AG	6831-6986	GT	AGG
-recovered snap_scaffold_416-snap.2-T1, initial, 3496, 3529
-recovered snap_scaffold_416-snap.2-T1, internal, 5853, 5956
-recovered snap_scaffold_416-snap.2-T1, internal, 6277, 6444
-recovered snap_scaffold_416-snap.2-T1, internal, 6831, 6986
Couldn't classify 6831, 6986
Sorry, prediction GlimmerHMM_glimmerT_60312-T1 fails validation.
(ATG)	 AG	6319-6444	GT	AGG
(CAG)	 AG	6831-6986	GT	AGG
-recovered GlimmerHMM_glimmerT_60312-T1, initial, 6319, 6444
-recovered GlimmerHMM_glimmerT_60312-T1, internal, 6319, 6444
-recovered GlimmerHMM_glimmerT_60312-T1, internal, 6831, 6986
Valid prediction for Augustus_model.g39929.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 157, 324
Couldn't classify 6776, 7003
Sorry, prediction snap_scaffold_416-snap.1-T1 fails validation.
(GGC)	 AG	157-324	GT	GGG
(TAG)	 AG	532-606	GT	AGG
(GAC)	 AG	750-861	GT	GGG
(CTA)	 AG	1139-1283	GT	AGG
(ACG)	 AG	3360-3477	GT	AGG
(CAC)	 AG	3735-3810	GT	ATG
(AAC)	 AG	6776-7003	GT	GGG
-recovered snap_scaffold_416-snap.1-T1, internal, 157, 324
-recovered snap_scaffold_416-snap.1-T1, internal, 532, 606
-recovered snap_scaffold_416-snap.1-T1, internal, 750, 861
-recovered snap_scaffold_416-snap.1-T1, internal, 1139, 1283
-recovered snap_scaffold_416-snap.1-T1, internal, 3360, 3477
-recovered snap_scaffold_416-snap.1-T1, internal, 3735, 3810
-recovered snap_scaffold_416-snap.1-T1, internal, 6776, 7003

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6993, rend_intergenic: 3496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7149
-exon list size: 18


building trellis

5.0    
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25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
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85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6993, rend_intergenic: 3496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support