-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_413

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_413-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6808, 6965
Sorry, prediction Augustus_model.g39927.t1 fails validation.
(ATG)	 AA	482-526	GT	AGG
(ACC)	 AG	2202-2295	GT	AGG
(TAA)	 AG	2929-3074	GT	AGG
(CTG)	 AG	4773-4868	GT	AGG
(CTG)	 AG	5868-5963	GT	AGG
(ACT)	 AG	6353-6419	GT	AGG
(GCC)	 AG	6808-6965	GT	AGG
-recovered Augustus_model.g39927.t1, initial, 482, 526
-recovered Augustus_model.g39927.t1, internal, 2202, 2295
-recovered Augustus_model.g39927.t1, internal, 2929, 3074
-recovered Augustus_model.g39927.t1, internal, 4773, 4868
-recovered Augustus_model.g39927.t1, internal, 5868, 5963
-recovered Augustus_model.g39927.t1, internal, 6353, 6419
-recovered Augustus_model.g39927.t1, internal, 6808, 6965
Valid prediction for GlimmerHMM_glimmerT_60309-T1
Couldn't classify 2155, 2295
Sorry, prediction GlimmerHMM_glimmerT_60310-T1 fails validation.
(ACT)	 AG	2155-2295	GT	AGG
(TAA)	 AG	2929-3094	GT	GTG
(CTA)	 AG	4822-5236	TG	AAT
-recovered GlimmerHMM_glimmerT_60310-T1, terminal, 4822, 5236
-recovered GlimmerHMM_glimmerT_60310-T1, internal, 2155, 2295
-recovered GlimmerHMM_glimmerT_60310-T1, internal, 2929, 3094
Couldn't classify 2155, 2295
Couldn't classify 6808, 6965
Sorry, prediction snap_scaffold_413-snap.2-T1 fails validation.
(ACT)	 AG	2155-2295	GT	AGG
(TAA)	 AG	2929-3092	GT	ATG
(CTG)	 AG	4773-4868	GT	AGG
(GGC)	 AG	4892-5209	GT	ATG
(CTG)	 AG	5868-5963	GT	AGG
(GGC)	 AG	5987-6419	GT	AGG
(GCC)	 AG	6808-6965	GT	AGG
-recovered snap_scaffold_413-snap.2-T1, internal, 2155, 2295
-recovered snap_scaffold_413-snap.2-T1, internal, 2929, 3092
-recovered snap_scaffold_413-snap.2-T1, internal, 4773, 4868
-recovered snap_scaffold_413-snap.2-T1, internal, 4892, 5209
-recovered snap_scaffold_413-snap.2-T1, internal, 5868, 5963
-recovered snap_scaffold_413-snap.2-T1, internal, 5987, 6419
-recovered snap_scaffold_413-snap.2-T1, internal, 6808, 6965

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6696, rend_intergenic: 222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7186
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6696, rend_intergenic: 222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support