-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_412

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2743, 3161
Couldn't classify 6405, 6519
Sorry, prediction snap_scaffold_412-snap.1-T1 fails validation.
(GAG)	 AG	2743-3161	GT	AGG
(AGA)	 AG	6405-6519	GT	GGG
-recovered snap_scaffold_412-snap.1-T1, internal, 2743, 3161
-recovered snap_scaffold_412-snap.1-T1, internal, 6405, 6519
Couldn't classify 6405, 6519
Sorry, prediction GlimmerHMM_glimmerT_60308-T1 fails validation.
(ATG)	 GG	1875-1924	GT	AGG
(AGA)	 AG	6405-6519	GT	GGG
-recovered GlimmerHMM_glimmerT_60308-T1, initial, 1875, 1924
-recovered GlimmerHMM_glimmerT_60308-T1, internal, 6405, 6519

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60307-T1
Valid prediction for Augustus_model.g39926.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7189
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support