-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_411

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4248, 4483
Couldn't classify 5971, 6081
Sorry, prediction pasa_asmbl_43682.p1 fails validation.
(CCC)	 CA	4248-4483	GT	AGG
(GTC)	 AG	5283-5384	GT	AGG
(AGA)	 AG	5624-5711	GT	TGG
(GCG)	 AG	5971-6081	TT	AGT
-recovered pasa_asmbl_43682.p1, internal, 5283, 5384
-recovered pasa_asmbl_43682.p1, internal, 5624, 5711
Valid prediction for Augustus_model.g39925.t1
Couldn't classify 5971, 6117
Sorry, prediction snap_scaffold_411-snap.2-T1 fails validation.
(ATG)	 GG	3443-3472	GT	AAG
(GTG)	 AG	4263-4483	GT	AGG
(GTC)	 AG	5283-5384	GT	AGG
(AGA)	 AG	5624-5711	GT	TGG
(GCG)	 AG	5971-6117	GT	AGG
-recovered snap_scaffold_411-snap.2-T1, initial, 3443, 3472
-recovered snap_scaffold_411-snap.2-T1, internal, 4263, 4483
-recovered snap_scaffold_411-snap.2-T1, internal, 5283, 5384
-recovered snap_scaffold_411-snap.2-T1, internal, 5624, 5711
-recovered snap_scaffold_411-snap.2-T1, internal, 5971, 6117
Couldn't classify 5971, 6117
Sorry, prediction GlimmerHMM_glimmerT_60306-T1 fails validation.
(ATG)	 TT	4089-4483	GT	AGG
(GTC)	 AG	5283-5384	GT	AGG
(AGA)	 AG	5624-5711	GT	TGG
(GCG)	 AG	5971-6117	GT	AGG
-recovered GlimmerHMM_glimmerT_60306-T1, initial, 4089, 4483
-recovered GlimmerHMM_glimmerT_60306-T1, internal, 5283, 5384
-recovered GlimmerHMM_glimmerT_60306-T1, internal, 5624, 5711
-recovered GlimmerHMM_glimmerT_60306-T1, internal, 5971, 6117

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_411-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6524, rend_intergenic: 3443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7193
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6524, rend_intergenic: 3443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support