-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_409

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3172, 3301
Couldn't classify 3945, 4039
Sorry, prediction snap_scaffold_409-snap.2-T1 fails validation.
(AAC)	 AG	3172-3301	GT	ATG
(CCG)	 AG	3945-4039	GT	TGG
-recovered snap_scaffold_409-snap.2-T1, internal, 3172, 3301
-recovered snap_scaffold_409-snap.2-T1, internal, 3945, 4039
Valid prediction for Augustus_model.g39921.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_409-snap.1-T1
Couldn't classify 1565, 1651
Sorry, prediction snap_scaffold_409-snap.3-T1 fails validation.
(GTA)	 AG	1565-1651	GT	ATG
(AGC)	 AG	1936-2024	GT	GTG
(ATA)	 AG	2974-3053	TT	GAT
-recovered snap_scaffold_409-snap.3-T1, terminal, 2974, 3053
-recovered snap_scaffold_409-snap.3-T1, internal, 1565, 1651
-recovered snap_scaffold_409-snap.3-T1, internal, 1936, 2024

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4089, rend_intergenic: 3172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7201
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4089, rend_intergenic: 3172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support