-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_408

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_408-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60302-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1338, 1477
Couldn't classify 7099, 7155
Sorry, prediction snap_scaffold_408-snap.1-T1 fails validation.
(GGC)	 AG	1338-1477	GT	TGG
(GCC)	 AG	1990-2056	GT	AGG
(GGC)	 AG	2097-2200	GT	AGG
(CCT)	 AG	3364-3431	GT	TGG
(GTA)	 AG	7099-7155	GT	AGG
-recovered snap_scaffold_408-snap.1-T1, internal, 1338, 1477
-recovered snap_scaffold_408-snap.1-T1, internal, 1990, 2056
-recovered snap_scaffold_408-snap.1-T1, internal, 2097, 2200
-recovered snap_scaffold_408-snap.1-T1, internal, 3364, 3431
-recovered snap_scaffold_408-snap.1-T1, internal, 7099, 7155

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5875, rend_intergenic: 170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7212
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5875, rend_intergenic: 170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support